Literature DB >> 33458167

The complete chloroplast genome sequence of Turpinia montana (Staphyleaceae).

Wei-Hong Sun1,2,3, Yi-Fan Wang1,2, De-Qiang Chen1,2,3, Shuang-Quan Zou1,2.   

Abstract

The Rosids are characterized by remarkable morphological and ecological diversity. Here, we provide the completed plasmid genome of Turpinia montana. The complete chloroplast size of T. montana is 160,111 bp, including a large single-copy (LSC) region of 89,631 bp, a small single-copy (SSC) region of 18,247 bp, a pair of invert repeats (IR) regions of 26,120 bp. Plastid genome contains 131 genes, 86 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis base on 23 plastid genomes indicates that T. montanas is clustered with the plants of the Euscaphis japonica and Staphylea bumalda.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Rosids; Turpinia montana; phylogeny; plastid genome

Year:  2020        PMID： 33458167      PMCID： PMC7783033          DOI： 10.1080/23802359.2020.1821821

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  8 in total

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Authors:  Lei Zhao; Xia Li; Ning Zhang; Shu-Dong Zhang; Ting-Shuang Yi; Hong Ma; Zhen-Hua Guo; De-Zhu Li
Journal:  Mol Phylogenet Evol       Date:  2016-06-28       Impact factor: 4.286

2.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

3.  Bandage: interactive visualization of de novo genome assemblies.

Authors:  Ryan R Wick; Mark B Schultz; Justin Zobel; Kathryn E Holt
Journal:  Bioinformatics       Date:  2015-06-22       Impact factor: 6.937

4.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

5.  The complete chloroplast genome sequence of Euscaphis japonica (Staphyleaceae).

Authors:  Shuang Xiang; Xue-Die Liu; Wei-Hong Sun; Si-Ren Lan; Zhong-Jian Liu; Shuang-Quan Zou
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-11       Impact factor: 0.658

6.  The complete chloroplast genome sequence of Tapiscia sinensis (Staphyleaceae).

Authors:  Jing-Yao Zhang; De-Qiang Chen; Shuang Xiang; Xi Wu; Yi-Fan Wang; Yi-Xun Le; Wei-Hong Sun; Shuang-Quan Zou; Yun-Wei Zhou; Xiao-Xing Zou
Journal:  Mitochondrial DNA B Resour       Date:  2020-07-06       Impact factor: 0.658

7.  OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.

Authors:  Marc Lohse; Oliver Drechsel; Sabine Kahlau; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2013-04-22       Impact factor: 16.971

8.  GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.

Authors:  Jian-Jun Jin; Wen-Bin Yu; Jun-Bo Yang; Yu Song; Claude W dePamphilis; Ting-Shuang Yi; De-Zhu Li
Journal:  Genome Biol       Date:  2020-09-10       Impact factor: 13.583
  8 in total

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