Literature DB >> 33458123

The complete genome sequence of Sorbus insignis (Rosaceae: Amygdaloideae), an epiphytic shrub in this genus.

Jing Tan1, Yi Wang1, Wei Wu1, Yongquan Li1, Wanyi Zhao2, Wenbo Liao2, Qiang Fan2, Boyong Liao1,2.   

Abstract

Sorbus insignis (Hook. f.) Hedl., belonging to S. sect. Multijugae Yu is an epiphytic shrub. Its phylogenetic position is still poorly understood. In this study, we assembled its complete chloroplast genome from whole-genome high-throughput sequencing data. The chloroplast genome was 159, 993 bp in length, with a large single-copy (LSC) region of 87, 932 bp, a small single-copy (SSC) region of 19, 255 bp, separated by two inverted repeat (IR) regions of 26, 403 bp each. It was predicted to contain a total of 132 genes, with an overall GC content of 36.56%. Phylogenetic analysis suggested S. insignis belongs to S. L. sensu stricto and closest to S. prattii Koehne among the published chloroplast genome.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Rosaceae; Sorbus insignis; chloroplast genome; illumina sequencing

Year:  2020        PMID: 33458123      PMCID: PMC7782918          DOI: 10.1080/23802359.2020.1810150

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

1.  Expanded phylogenetic and dating analyses of the apples and their relatives (Pyreae, Rosaceae).

Authors:  Eugenia Y Y Lo; Michael J Donoghue
Journal:  Mol Phylogenet Evol       Date:  2012-01-25       Impact factor: 4.286

2.  Molecular phylogenetics and historical biogeography of Sorbus sensu stricto (Rosaceae).

Authors:  Meng Li; Tetsuo Ohi-Toma; Yun-Dong Gao; Bo Xu; Zhang-Ming Zhu; Wen-Bin Ju; Xin-Fen Gao
Journal:  Mol Phylogenet Evol       Date:  2017-03-23       Impact factor: 4.286

3.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

4.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

5.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

6.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

7.  GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.

Authors:  Jian-Jun Jin; Wen-Bin Yu; Jun-Bo Yang; Yu Song; Claude W dePamphilis; Ting-Shuang Yi; De-Zhu Li
Journal:  Genome Biol       Date:  2020-09-10       Impact factor: 13.583

  7 in total

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