Literature DB >> 33458122

Phylogenetic analyses to uncover the evolutionary relationship of a newly sequenced mitochondrial genome from an Eastern spinebill (Acanthorhynchus tenuirostris).

Subir Sarker1, Ajani Athukorala1, Saranika Talukder2, David N Phalen3.   

Abstract

The Eastern spinebill (Acanthorhynchus tenuirostris), a passerine bird in the family Meliphagidae (honeyeaters), a dominant group of birds in Australia and New Guinea. The aim of this study was to sequence the complete mitochondrial genome of the Eastern spinebill and use its sequence to better define the phylogeny of this species. The complete mitogenome sequence of A. tenuirostris was circular and 16,614 bp in length, and its architecture was conserved in comparison to other mitogenome sequences under the family Meliphagidae. The Eastern spinebill mitogenome had the highest sequence identity with mitogenome sequences of two other honeyeaters, the white eared honeyeater, Nesoptilotis leucotis, (84.9%) and the white-plumed honeyeater, Ptilotula penicillata (85.5%). The maximum-likelihood topology distinctly discriminated the Eastern spinebill sequence against all other species of the Meliphagidae with significant bootstrap supports. We suggest the widespread sampling and complete mitogenome sequencing would be valuable in establishing the most accurate phylogenetic taxonomy of the family Meliphagidae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Acanthorhynchus tenuirostris; Phylogeny; avian mtDNA; family Meliphagidae; order Passeriformes

Year:  2020        PMID: 33458122      PMCID: PMC7782030          DOI: 10.1080/23802359.2020.1810149

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  11 in total

1.  Phylogeny and evolution of the Australo-Papuan honeyeaters (Passeriformes, Meliphagidae).

Authors:  Amy C Driskell; Les Christidis
Journal:  Mol Phylogenet Evol       Date:  2004-06       Impact factor: 4.286

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  A molecular phylogeny of Pacific honeyeaters (Aves: Meliphagidae) reveals extensive paraphyly and an isolated Polynesian radiation.

Authors:  Michael J Andersen; Alivereti Naikatini; Robert G Moyle
Journal:  Mol Phylogenet Evol       Date:  2013-12-06       Impact factor: 4.286

4.  Molecular characterisation of a novel pathogenic avipoxvirus from the Australian magpie (Gymnorhina tibicen).

Authors:  Subir Sarker; Steven Batinovic; Saranika Talukder; Shubhagata Das; Fiona Park; Steve Petrovski; Jade K Forwood; Karla J Helbig; Shane R Raidal
Journal:  Virology       Date:  2019-11-07       Impact factor: 3.616

5.  Phylogeny and evolution of the Meliphagoidea, the largest radiation of Australasian songbirds.

Authors:  Janet L Gardner; John W H Trueman; Daniel Ebert; Leo Joseph; Robert D Magrath
Journal:  Mol Phylogenet Evol       Date:  2010-02-10       Impact factor: 4.286

6.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

7.  Molecular and microscopic characterization of a novel Eastern grey kangaroopox virus genome directly from a clinical sample.

Authors:  Subir Sarker; Hayley K Roberts; Naomie Tidd; Shayne Ault; Georgia Ladmore; Andrew Peters; Jade K Forwood; Karla Helbig; Shane R Raidal
Journal:  Sci Rep       Date:  2017-11-28       Impact factor: 4.379

8.  Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.).

Authors:  Subir Sarker; Shubhagata Das; Jennifer L Lavers; Ian Hutton; Karla Helbig; Jacob Imbery; Chris Upton; Shane R Raidal
Journal:  BMC Genomics       Date:  2017-04-13       Impact factor: 3.969

9.  The first complete mitogenome of Indian ringneck (Psittacula krameri) demonstrates close phylogenetic relationship with Eclectus parrot.

Authors:  Subir Sarker; Michelle Sutherland; Saranika Talukder; Shubhagata Das; Jade K Forwood; Karla Helbig; Shane R Raidal
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-15       Impact factor: 0.658

10.  Molecular characterization of the first saltwater crocodilepox virus genome sequences from the world's largest living member of the Crocodylia.

Authors:  Subir Sarker; Sally R Isberg; Natalie L Milic; Peter Lock; Karla J Helbig
Journal:  Sci Rep       Date:  2018-04-04       Impact factor: 4.379

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