Literature DB >> 33458098

The complete chloroplast genome sequence of Monotropa uniflora (Ericaceae).

XueDie Liu1,2, XingYu Liao1,2, DeQiang Chen1,2, Yu Zheng1,2, Xia Yu2, XinYu Xu2, ZhongJian Liu1,2, SiRen Lan1,2.   

Abstract

Monotropa uniflora is one of the representative plants of Ericaceae family, which was famous for entire translucent and 'ghostly' white. Also, unique lifestyle also attracts lots of researchers, which it obtains through fixed carbon from photosynthetic plants via a shared mycorrhizal network. In this study, the complete chloroplast (cp) genome of M. uniflora was assembled and annotated, its full-length is 26,913 bp. Plastid genome contains 31 genes, 14 protein-coding genes, 14 tRNA genes, and 3 rRNA genes. The phylogenetic analyses based on the complete chloroplast genome sequence provided solid evidence that M. uniflora has a close relationship M. odorata. The chloroplast genome presented here will help for further conservation of M. uniflora and other saprophytes.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Ericaceae; Monotropa uniflora; phylogenetic analysis; plastid genome

Year:  2020        PMID: 33458098      PMCID: PMC7782332          DOI: 10.1080/23802359.2020.1806754

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  8 in total

1.  HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching.

Authors:  Guiqi Bi; Yunxiang Mao; Qikun Xing; Min Cao
Journal:  Genomics       Date:  2017-08-03       Impact factor: 5.736

2.  Effect of mycorrhizal infection on nitrogen and phosphorus nutrition of ericaceous plants.

Authors:  D J Read; D P Stribley
Journal:  Nat New Biol       Date:  1973-07-18

3.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

4.  Bandage: interactive visualization of de novo genome assemblies.

Authors:  Ryan R Wick; Mark B Schultz; Justin Zobel; Kathryn E Holt
Journal:  Bioinformatics       Date:  2015-06-22       Impact factor: 6.937

5.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

6.  OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.

Authors:  Marc Lohse; Oliver Drechsel; Sabine Kahlau; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2013-04-22       Impact factor: 16.971

7.  Balanced gene losses, duplications and intensive rearrangements led to an unusual regularly sized genome in Arbutus unedo chloroplasts.

Authors:  Fernando Martínez-Alberola; Eva M Del Campo; David Lázaro-Gimeno; Sergio Mezquita-Claramonte; Arantxa Molins; Isabel Mateu-Andrés; Joan Pedrola-Monfort; Leonardo M Casano; Eva Barreno
Journal:  PLoS One       Date:  2013-11-18       Impact factor: 3.240

8.  Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives.

Authors:  Maria D Logacheva; Mikhail I Schelkunov; Victoria Y Shtratnikova; Maria V Matveeva; Aleksey A Penin
Journal:  Sci Rep       Date:  2016-07-25       Impact factor: 4.379

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.