Literature DB >> 33458094

The complete chloroplast genome sequence of Acorus tatarinowii (Araceae) from Fujian, China.

Liang Ma1,2, Shu-Zhen Jiang1,2, Hui Lian1,2, Yuan-Fang Xiong1,2, Zhong-Jian Liu1,2,3, Shi-Pin Chen1,2.   

Abstract

Acorus tatarinowii is a useful traditional Chinese medicine (TCM) and is officially documented in the Chinese Pharmacopeia with the name 'Shi Chang Pu'. It belongs to the Araceae family and is used for the treatment of dementia, epilepsy, amnesia and insomnia. We resequenced complete chloroplast (cp) genome of A. tatarinowii from Fujian, China. The whole genome was 153,453 bp in length, consisting of a pair of inverted repeats (IR 25,795 bp), a large single-copy region (LSC 83,631 bp), and a small single-copy region (SSC 18,232 bp). The complete genome contained 132 genes, including 84 protein-coding genes, 38 tRNA, and 8 rRNA genes. The overall GC content of the whole genome was 38.7%. A maximum-likelihood phylogenetic analysis showed that A. tatarinowii is sister to A. tatarinowii which was collected in Yunnan, China. The complete chloroplast genome of A. tatarinowii will help improve and integrate the existing genome data of monocots and provide insights into the phylogenetic relationship among basal angiosperms, monocots and dicots.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Acorus tatarinowii; Araceae; chloroplast genome; phylogeny

Year:  2020        PMID: 33458094      PMCID: PMC7782871          DOI: 10.1080/23802359.2020.1806133

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  8 in total

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Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

4.  Bandage: interactive visualization of de novo genome assemblies.

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Journal:  Bioinformatics       Date:  2015-06-22       Impact factor: 6.937

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Authors:  Yu-Ting Jiang; Ru-Qiang Lin; Bin Liu; Qin-Meng Zeng; Zhong-Jian Liu; Shi-Pin Chen
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-11       Impact factor: 0.658

7.  Complete plastome sequence of Acorus tatarinowii (Acoraceae), a traditional Chinese medicinal plant from Xishuangbanna, Yunnan, China.

Authors:  Gong Yan-Xiong; Tian Yao-Hua; Nan Jiang; Wen-Bin Yu
Journal:  Mitochondrial DNA B Resour       Date:  2019-12-13       Impact factor: 0.658

8.  OrganellarGenomeDRAW--a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets.

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Journal:  Nucleic Acids Res       Date:  2013-04-22       Impact factor: 16.971

  8 in total

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