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Literature DB >> 33458093

The complete mitochondrial genome of Pyropia pulchra (Bangiophyceae, Rhodophyta).

Abstract

Pyropia pulchra (Hollenberg) S.C. Lindstrom & Hughey is a foliose seaweed in Bangiales order distributed in North America. We assembled the complete mitochondrial genome sequence of Pyropia pulchra (33,190 bp), and annotated 26 protein-coding genes, 24 transfer RNAs, and 2 ribosomal RNAs. We analyzed a maximum likelihood tree using conserved 23 mitochondrial genes from Bangiales species. The mitochondrial phylogeny of Bangiales species shows a strong monophyletic relationship of genus Pyropia, and the taxonomic position of P. pulchra within the genus.

Entities: Disease Species

Keywords: Pyropia pulchra; mitochondrial genome; phylogenetic analysis

Year: 2020 PMID： 33458093 PMCID： PMC7782328 DOI： 10.1080/23802359.2020.1806132

Source DB: PubMed Journal: Mitochondrial DNA B Resour ISSN： 2380-2359 Impact factor: 0.658

10 in total

1. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors: Dean Laslett; Bjorn Canback
Journal: Nucleic Acids Res Date: 2004-01-02 Impact factor: 16.971

2. Identification of a new marine algal species Pyropia nitida sp. nov. (Bangiales: Rhodophyta) from Monterey, California.

Authors: Leeanne K Harden; Karina M Morales; Jeffery R Hughey
Journal: Mitochondrial DNA A DNA Mapp Seq Anal Date: 2015-07-08 Impact factor: 1.514

3. Recent developments in the MAFFT multiple sequence alignment program.

Authors: Kazutaka Katoh; Hiroyuki Toh
Journal: Brief Bioinform Date: 2008-03-27 Impact factor: 11.622

4. A NEW LOOK AT AN ANCIENT ORDER: GENERIC REVISION OF THE BANGIALES (RHODOPHYTA)(1).

Authors: Judith E Sutherland; Sandra C Lindstrom; Wendy A Nelson; Juliet Brodie; Michael D J Lynch; Mi Sook Hwang; Han-Gu Choi; Masahiko Miyata; Norio Kikuchi; Mariana C Oliveira; Tracy Farr; Chris Neefus; Agnes Mols-Mortensen; Daniela Milstein; Kirsten M Müller
Journal: J Phycol Date: 2011-09-13 Impact factor: 2.923

1 in total

1. Identification of Medicinal Bidens Plants for Quality Control Based on Organelle Genomes.

Authors: Liwei Wu; Liping Nie; Shiying Guo; Qing Wang; Zhengjun Wu; Yulin Lin; Yu Wang; Baoli Li; Ting Gao; Hui Yao
Journal: Front Pharmacol Date: 2022-02-14 Impact factor: 5.810

1 in total

The complete mitochondrial genome of Pyropia pulchra (Bangiophyceae, Rhodophyta).

1. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

2. Identification of a new marine algal species Pyropia nitida sp. nov. (Bangiales: Rhodophyta) from Monterey, California.

3. Recent developments in the MAFFT multiple sequence alignment program.

4. A NEW LOOK AT AN ANCIENT ORDER: GENERIC REVISION OF THE BANGIALES (RHODOPHYTA)(1).

Review 5. Porphyra: a marine crop shaped by stress.

6. A SURVEY OF BANGIALES (RHODOPHYTA) BASED ON MULTIPLE MOLECULAR MARKERS REVEALS CRYPTIC DIVERSITY(1).

7. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

8. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

9. Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes.

10. The first plastid genome of a filamentous taxon 'Bangia' sp. OUCPT-01 in the Bangiales.

1. Identification of Medicinal Bidens Plants for Quality Control Based on Organelle Genomes.