Literature DB >> 33458090

Characterization of the complete chloroplast genome of Arisaema erubescens (Wall.) Schott, a traditional Chinese medicinal herb.

Yan Zhang1, Xiuzhi Guo1, Binbin Yan1.   

Abstract

Arisaema erubescens is a well-known medicinal plant in China. In this study, we sequenced the complete chloroplast (cp) genome sequence of A. erubescens to investigate its phylogenetic relationship in the family Araceae. The cp genome was 167,607 bp in length, consisting of a pair of inverted repeats (IRa and IRb: 26,193 bp) separated by a large single-copy region (LSC: 93,660 bp) and a small single-copy region (SSC: 21,561 bp). The GC content of whole cp genome is 35.3%. De novo assembly and annotation showed the presence of 114 unique genes with 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis indicated that A. erubescens was closely related to A. franchetianum, and the genus Arisaema was sister to the genus Pinellia.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Arisaema erubescens; chloroplast genome phylogenetic relationship

Year:  2020        PMID: 33458090      PMCID: PMC7782955          DOI: 10.1080/23802359.2020.1797577

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

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2.  Plann: A command-line application for annotating plastome sequences.

Authors:  Daisie I Huang; Quentin C B Cronk
Journal:  Appl Plant Sci       Date:  2015-08-10       Impact factor: 1.936

3.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

4.  Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species.

Authors:  Jiahui Sun; Yiheng Wang; Yanlei Liu; Chao Xu; Qingjun Yuan; Lanping Guo; Luqi Huang
Journal:  Sci Rep       Date:  2020-07-10       Impact factor: 4.379

  4 in total

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