Literature DB >> 33458086

The complete mitochondrial genome of large odorous frog, Odorrana graminea (Amphibia: Ranidae) and phylogenetic analysis.

Xiangxiang Jin1,2,3, Weiye Li1,2,3, Shijia Hu1,2,3, Wangming Li1,2,3, Jianchun Yang1,2,3.   

Abstract

The mitochondrial genome of Odorrana graminea was sequenced and analyzed. The complete mitochondrial genome is 18,106 bp in length, including 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 21 transfer RNA genes, and a control region (D-loop). All PCGs are initiated by ATN codons, except for GTG for COI and ND5. Five PCGs use a common stop codon of TAA or TAG, whereas COI terminats with AGG as stop codon; ND6 with AGA; the other six ends with an incomplete stop codon (a single stop nucleotide T). The analysis results based on Bayesian inference method provide a useful resource for the phylogenetic studies of superfamily Ranoidea.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Complete mitochondrial genome; Odorrana graminea; sequence analysis

Year:  2020        PMID: 33458086      PMCID: PMC7782977          DOI: 10.1080/23802359.2019.1674716

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

1.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

2.  Complete mitochondrial genome of Paramegophrys oshanensis (Amphibia, Anura, Megophryidae).

Authors:  Tianmin Xiang; Bin Wang; Xixi Liang; Jianping Jiang; Cheng Li; Feng Xie
Journal:  Mitochondrial DNA       Date:  2013-02-07

3.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

4.  The complete mitochondrial genome of the Odorrana schmackeri (Anura, Ranidae).

Authors:  Xingjiang Bu; Lijuan Zhang; Kexin He; Yanmei Jiang; Liuwang Nie
Journal:  Mitochondrial DNA B Resour       Date:  2016-03-28       Impact factor: 0.658

  4 in total
  1 in total

1.  The complete mitochondrial genome of Odorrana grahami (Anura: Ranidae).

Authors:  Yang Wen; Chunqing Li; Heng Xiao
Journal:  Mitochondrial DNA B Resour       Date:  2021-05-23       Impact factor: 0.658

  1 in total

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