Literature DB >> 33458064

The complete mitochondrial genome sequence of Cletus rubidiventris (Heteroptera: Coreidae).

Shijun Yang1,2,3, Rong Hou1,2,3, Kongju Wu1,2,3, Peng Liu1,2,3, Yuxiang Chen1,2,3, Wanjing Yang4, Peng Chen1,2,3.   

Abstract

Cletus rubidiventris is a crop pest, especially for rice. This study first reported the complete mitochondrial genome of this species. The total length of mitochondrial genome is 15,590 bp and including 13 PCGs, 22 tRNA genes, and 2 rRNA genes, with 31.8% T, 15.8% C, 41.6% A, and 10.8% G. The overall GC content of the genome is 27%. The mitochondrial genome order, nucleotide composition, and codon usage pattern is similar to C. punctiger. The phylogenetic tree shows that C. rubidiventris belong to the Coreidae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Cletus rubidiventris; mitochondrial genome; phylogenetic analysis

Year:  2020        PMID： 33458064      PMCID： PMC7783099          DOI： 10.1080/23802359.2020.1797590

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  4 in total

1.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

2.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

3.  The complete mitochondrial genome sequence of Cletus punctiger (Heteroptera: Coreidae).

Authors:  Huanyu Zhang; Xiaolei Yu; Weiling Jiang; Han Gao; Wei Tan; Wenxiu Wang; Yuxia Liu; Xiaoxuan Tian
Journal:  Mitochondrial DNA B Resour       Date:  2019-10-09       Impact factor: 0.658

4.  SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Authors:  Ruibang Luo; Binghang Liu; Yinlong Xie; Zhenyu Li; Weihua Huang; Jianying Yuan; Guangzhu He; Yanxiang Chen; Qi Pan; Yunjie Liu; Jingbo Tang; Gengxiong Wu; Hao Zhang; Yujian Shi; Yong Liu; Chang Yu; Bo Wang; Yao Lu; Changlei Han; David W Cheung; Siu-Ming Yiu; Shaoliang Peng; Zhu Xiaoqian; Guangming Liu; Xiangke Liao; Yingrui Li; Huanming Yang; Jian Wang; Tak-Wah Lam; Jun Wang
Journal:  Gigascience       Date:  2012-12-27       Impact factor: 6.524
  4 in total

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