Literature DB >> 33458063

The complete chloroplast genome of Ulmus parvifolia, an important landscaping tree.

Yunzhou Lyu1, Min Zhai2,3, Zeping Jiang1, Qingsheng Chen1.   

Abstract

Ulmus parvifolia is a promising tree species for landscaping. In this study, the complete genome of U. parvifolia was reported using next-generation sequencing technology. The chloroplast genome was a circular double-stranded DNA molecule with 159,182 bp in length. It contained a large single copy (LSC) region of 87,838 bp, a small single copy (SSC) region of 18,750 bp, and two inverted repeat (IRa and IRb) regions of 26,297 bp each, which exhibited a typical quadripartite structure. A total of 133 genes were identified, including 84 protein-coding genes, 41 tRNA genes, and eight rRNA genes. The overall GC content in the chloroplast genome was 35.59%. Phylogenetic analysis indicated that U. parvifolia, as a representative of Sect. Microptelea within the Ulmus genus, is sister to the species of Sect. Ulmus.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Ulmus parvifolia; chloroplast genome; phylogenetic analysis

Year:  2020        PMID: 33458063      PMCID: PMC7782144          DOI: 10.1080/23802359.2020.1797586

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  5 in total

1.  Micropropagation and germplasm conservation of Central Park Splendor Chinese elm (Ulmus parvifolia Jacq. 'A/Ross Central Park') trees.

Authors:  R C Thakur; D F Karnosky
Journal:  Plant Cell Rep       Date:  2007-03-13       Impact factor: 4.570

2.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

3.  Effects of induced water stress on leaf trichome density and foliar nutrients of three elm (Ulmus) species: implications for resistance to the elm leaf beetle.

Authors:  Paul P Bosu; Michael R Wagner
Journal:  Environ Entomol       Date:  2007-06       Impact factor: 2.377

4.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

5.  Complete chloroplast genome sequence of Amomum villosum.

Authors:  Dong-Mei Li; Chao-Yi Zhao; Gen-Fa Zhu; Ye-Chun Xu
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-22       Impact factor: 0.658

  5 in total

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