Literature DB >> 33458057

Six additional mitochondrial genomes for North American nightsnakes (Dipsadidae: Hypsiglena) and a novel gene feature for advanced snakes.

Edward A Myers1, Daniel G Mulcahy2.   

Abstract

The North American nightsnakes in the genus Hypsiglena is composed of nine named and at least two unnamed species. Here, we provide the first mt-genome of H. affinis, an additional mt-genome for H. sp. nov. 1, and four additional mt-genomes from the widespread H. jani. These mtDNA genomes were sequenced using both Illumina and Ion Torrent sequencing technologies. The resulting genomes contained the expected 13 protein coding genes, 22 tRNA genes, 2 rRNA genes, and 2 control regions typical of colubroid snakes. Two of the H. jani samples had partial tRNAIle genes upstream of CR2 which has not been previously documented in colubroid snakes. A maximum likelihood gene-tree based on these data combined with previously published sequence data recovers a well-supported phylogeny and is in concordance with previous estimates of evolutionary relationships in this group.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Dipsadinae; Hypsiglena; Squamata; mtDNA; nightsnake

Year:  2020        PMID: 33458057      PMCID: PMC7781862          DOI: 10.1080/23802359.2020.1797573

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  8 in total

1.  Complete mitochondrial DNA sequences of six snakes: phylogenetic relationships and molecular evolution of genomic features.

Authors:  Songyu Dong; Yoshinori Kumazawa
Journal:  J Mol Evol       Date:  2005-06-29       Impact factor: 2.395

2.  Vicariance and dispersal form a ring distribution in nightsnakes around the Gulf of California.

Authors:  Daniel G Mulcahy; J Robert Macey
Journal:  Mol Phylogenet Evol       Date:  2009-06-06       Impact factor: 4.286

3.  The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions.

Authors:  Y Kumazawa; H Ota; M Nishida; T Ozawa
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

4.  Phylogeography and species boundaries of the western North American Nightsnake (Hypsiglena torquata): revisiting the subspecies concept.

Authors:  Daniel G Mulcahy
Journal:  Mol Phylogenet Evol       Date:  2007-12-23       Impact factor: 4.286

5.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

6.  Revealing the complete mitochondrial genome of Thermophis baileyi Wall, 1907 (Reptilia: Colubridae) through the next-generation sequencing.

Authors:  Feng-Hui Sun
Journal:  Mitochondrial DNA B Resour       Date:  2017-07-07       Impact factor: 0.658

7.  Evolution of the mitochondrial genome in snakes: gene rearrangements and phylogenetic relationships.

Authors:  Jie Yan; Hongdan Li; Kaiya Zhou
Journal:  BMC Genomics       Date:  2008-11-28       Impact factor: 3.969

8.  Rediscovery of an endemic vertebrate from the remote Islas Revillagigedo in the eastern Pacific Ocean: the Clarión nightsnake lost and found.

Authors:  Daniel G Mulcahy; Juan E Martínez-Gómez; Gustavo Aguirre-León; Juan A Cervantes-Pasqualli; George R Zug
Journal:  PLoS One       Date:  2014-05-16       Impact factor: 3.240

  8 in total

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