Literature DB >> 33458049

Characterization of the complete mitochondrial genome of biocontrol yeast Sporobolomyces sp. (Sporidiobolales: Sporidiobolaceae) with phylogenetic analysis.

Jingwei Huang1,2, Huijuan Qu3, Xueshan Shen3.   

Abstract

In this study, we obtained the complete mitochondrial genome of Sporobolomyces sp. using next-generation sequencing. The complete mitochondrial genome of Sporobolomyces sp. contained 15 protein-coding genes (PCG), two ribosomal RNA (rRNA) genes, and 25 transfer RNA (tRNA) genes. The total length of the Sporobolomyces sp. mitochondrial genome is 26,430 bp, and the GC content of the mitochondrial genome is 39.32%. Phylogenetic analysis based on combined mitochondrial gene dataset indicated that the mitochondrial genome of Sporobolomyces sp. exhibited a close relationship with that of Rhodotorula mucilaginosa.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Yeast; evolution; mitochondrial genome; phylogenetic analysis

Year:  2020        PMID： 33458049      PMCID： PMC7782182          DOI： 10.1080/23802359.2020.1797581

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  19 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Sporobolomyces agrorum sp. nov. and Sporobolomyces sucorum sp. nov., two novel basidiomycetous yeast species isolated from grape and apple must in Italy.

Authors:  Marilinda Lorenzini; Giacomo Zapparoli; Michela Azzolini; Cláudia Carvalho; José Paulo Sampaio
Journal:  Int J Syst Evol Microbiol       Date:  2019-11       Impact factor: 2.747

3.  Comparative mitogenomics reveals large-scale gene rearrangements in the mitochondrial genome of two Pleurotus species.

Authors:  Qiang Li; Cheng Chen; Chuan Xiong; Xin Jin; Zuqin Chen; Wenli Huang
Journal:  Appl Microbiol Biotechnol       Date:  2018-05-24       Impact factor: 4.813

4.  The complete mitochondrial genomes of two model ectomycorrhizal fungi (Laccaria): features, intron dynamics and phylogenetic implications.

Authors:  Qiang Li; Luxi Yang; Dabing Xiang; Yan Wan; Qi Wu; Wenli Huang; Gang Zhao
Journal:  Int J Biol Macromol       Date:  2019-10-25       Impact factor: 6.953

5.  The 206 kbp mitochondrial genome of Phanerochaete carnosa reveals dynamics of introns, accumulation of repeat sequences and plasmid-derived genes.

Authors:  Xu Wang; Andong Song; Fengqin Wang; Mingyue Chen; Xiao Li; Qiang Li; Na Liu
Journal:  Int J Biol Macromol       Date:  2020-06-18       Impact factor: 6.953

6.  Phylogenetic analysis of the ballistoconidium-forming yeast genus Sporobolomyces based on 18S rDNA sequences.

Authors:  M Hamamoto; T Nakase
Journal:  Int J Syst Evol Microbiol       Date:  2000-05       Impact factor: 2.747

7.  Characterization and comparative mitogenomic analysis of six newly sequenced mitochondrial genomes from ectomycorrhizal fungi (Russula) and phylogenetic analysis of the Agaricomycetes.

Authors:  Qiang Li; Qiangfeng Wang; Cheng Chen; Xin Jin; Zuqin Chen; Chuan Xiong; Ping Li; Jian Zhao; Wenli Huang
Journal:  Int J Biol Macromol       Date:  2018-08-01       Impact factor: 6.953

8.  The complete mitochondrial genomes of five important medicinal Ganoderma species: Features, evolution, and phylogeny.

Authors:  Qiang Li; Dabing Xiang; Yan Wan; Qi Wu; Xiaoyong Wu; Chengrui Ma; Yue Song; Gang Zhao; Wenli Huang
Journal:  Int J Biol Macromol       Date:  2019-08-02       Impact factor: 6.953

9.  Sporobolomyces koalae sp. nov., a basidiomycetous yeast isolated from nasal smears of Queensland koalas kept in a Japanese zoological park.

Authors:  Kazuo Satoh; Koichi Makimura
Journal:  Int J Syst Evol Microbiol       Date:  2008-12       Impact factor: 2.747
View more
  1 in total

1.  The complete mitochondrial genome sequence of the Metschnikowia bicuspidata (Metschnikoff, 1884), an emerging pathogen of 'milky disease' in Chinese mitten crab.

Authors:  Jiannan Liu; Jieying Yu; Senting Pu; Xinran Shi; Yihao Li; Xiaoran Zhao; Shigen Ye
Journal:  Mitochondrial DNA B Resour       Date:  2022-07-12       Impact factor: 0.610
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.