Literature DB >> 33458042

The complete chloroplast genome of Akebia quinata (Lardizabalaceae) and phylogenetic analysis.

Jie Min1, Tao Tao1.   

Abstract

Akebia quinata is an herb medicine plant in traditional oriental medicine in China. In this current study, we had assembled the complete chloroplast genome of A. quinata. The complete chloroplast genome sequence of A. quinata has a total 157,817 bp in size and has a typical quadripartite structure, which is the same as other plant species chloroplast genome. It contained a large single-copy (LSC) region of 86,544 bp, a small single-copy (SSC) region of 18,989 bp and two inverted repeat (IR) regions of 26,142 bp. The complete chloroplast genome sequence contains 132 genes, including 87 encoding genes, 37 transfer RNA genes, and eight ribosomal RNA genes. One of IR region harbors seven protein encoding genes, seven tRNA genes, and four rRNA genes. Phylogenetic analysis result showed that A. quinata is closely related to Decaisnea insignis of the family Lardizabalaceae using the maximum-likelihood (ML) method in this study.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Akebia quinata; Lardizabalaceae; chloroplast; genome sequence; phylogenetic analysis

Year:  2020        PMID: 33458042      PMCID: PMC7781986          DOI: 10.1080/23802359.2020.1797557

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


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1.  The complete chloroplast genome of Akebia trifoliata subsp. australis (Lardizabalaceae), a medicinal plant in China.

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  1 in total

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