Literature DB >> 33458036

Complete mitochondrial genome of Pseudocrangonyx joolaei (Crustacea: Amphipoda: Pseudocrangonyctidae).

Chi-Woo Lee1, Takafumi Nakano2, Ko Tomikawa3, Gi-Sik Min1.   

Abstract

The complete mitochondrial genome of a subterranean pseudocrangonyctid amphipod, Pseudocrangonyx joolaei, was determined in this paper. The complete mitogenome of P. joolaei was 14,814 bp in length with the typical 13 protein-coding genes, 22 transfer RNAs, two ribosomal RNAs, and a control region (CR). The gene order of P. joolaei was unique in that the CR was an inversion, and the gene order of Pseudocrangonyx was not concordant when compared to that of P. daejeonensis, a subterranean amphipod found in Korea. A maximum-likelihood tree, constructed based on 26 eumalacostracan mitogenomes, confirmed that P. joolaei supported monophyly in the family Pseudocrangonyctidae and is most closely related to the superfamily Crangonyctoidea.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Amphipoda; Korea; Pseudocrangonyx joolaei; cave; complete mitogenome

Year:  2020        PMID: 33458036      PMCID: PMC7782889          DOI: 10.1080/23802359.2020.1797592

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  9 in total

1.  Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices.

Authors:  Olga Chernomor; Arndt von Haeseler; Bui Quang Minh
Journal:  Syst Biol       Date:  2016-04-26       Impact factor: 15.683

2.  The complete mitochondrial genome of the mysid shrimp, Neomysis japonica (Crustacea, Malacostraca, Mysida).

Authors:  Ji-Hun Song; Sanghee Kim; Sook Shin; Gi-Sik Min
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2015-06-26       Impact factor: 1.514

3.  The complete mitochondrial genome of the subterranean crustacean Metacrangonyx longipes (Amphipoda): a unique gene order and extremely short control region.

Authors:  Maria M Bauza-Ribot; Damia Jaume; Carlos Juan; Joan Pons
Journal:  Mitochondrial DNA       Date:  2009-08

4.  A new species of the genus Pseudocrangonyx (Crustacea: Amphipoda: Pseudocrangonyctidae) from Simbok Cave, Korea.

Authors:  Chi-Woo Lee; K O Tomikawa; Takafumi Nakano; Gi-Sik Min
Journal:  Zootaxa       Date:  2020-02-07       Impact factor: 1.091

5.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

6.  A new subterranean species of Pseudocrangonyx from China with an identification key to all species of the genus (Crustacea, Amphipoda, Pseudocrangonyctidae).

Authors:  Shuangyan Zhao; Zhonge Hou
Journal:  Zookeys       Date:  2017-01-23       Impact factor: 1.546

7.  Comparative mitogenomic analyses of three North American stygobiont amphipods of the genus Stygobromus (Crustacea: Amphipoda).

Authors:  Aaron William Aunins; David L Nelms; Christopher S Hobson; Timothy L King
Journal:  Mitochondrial DNA B Resour       Date:  2016-11-21       Impact factor: 0.658

8.  The complete mitochondrial genome of the deep-sea amphipod Eurythenes magellanicus (Crustacea: Amphipoda: Lysianassidae).

Authors:  Jun-Yuan Li; Yan-Wen Liao; Jun Li; Li-Sheng He
Journal:  Mitochondrial DNA B Resour       Date:  2019-12-17       Impact factor: 0.658

9.  The complete mitochondrial genome of Pseudocrangonyx daejeonensis (Crustacea: Amphipoda: Pseudocrangonyctidae).

Authors:  Chi-Woo Lee; Takafumi Nakano; Ko Tomikawa; Gi-Sik Min
Journal:  Mitochondrial DNA B Resour       Date:  2018-07-31       Impact factor: 0.658

  9 in total

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