Literature DB >> 33458029

The complete chloroplast genome of Sinomenium acutum (Menispermaceae).

Jinhyuk Kim1, Junki Lee1, Sanghee Um1, Sunseong Choi1, Hyojin Kim1, Hyang Sook Chun2, Gyoungju Nah1.   

Abstract

We generated the complete chloroplast genome sequence of Sinomenium acutum, a species of the Menispermaceae family, and characterized from the de novo assembly of Illumina HiSeq paired-end sequencing data. The total length of the chloroplast genome of S. acutum was 162,787 bp with a large single-copy (LSC) region of 91,430 bp, a small single-copy (SSC) region of 21,245 bp, and a pair of identical inverted repeat regions (IRs) of 25,056 bp. The total of 131 genes were annotated in the chloroplast genome of Sinomenium acutum, including 85 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. The phylogenetic analysis of S. acutum with 18 related species revealed the closest taxonomical relationship with Menispermum dauricum in the Menispermaceae family.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Sinomenium acutum; complete chloroplast genome; next generation sequencing; phylogenetic tree

Year:  2020        PMID： 33458029      PMCID： PMC7783043          DOI： 10.1080/23802359.2020.1797570

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  8 in total

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4.  Alkaloids from the stems and rhizomes of Sinomenium acutum from the Qinling Mountains, China.

Authors:  Hai-Ning Lyu; Ke-Wu Zeng; Nan-Kai Cao; Ming-Bo Zhao; Yong Jiang; Peng-Fei Tu
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Authors:  Kyunghee Kim; Sang-Choon Lee; Junki Lee; Yeisoo Yu; Kiwoung Yang; Beom-Soon Choi; Hee-Jong Koh; Nomar Espinosa Waminal; Hong-Il Choi; Nam-Hoon Kim; Woojong Jang; Hyun-Seung Park; Jonghoon Lee; Hyun Oh Lee; Ho Jun Joh; Hyeon Ju Lee; Jee Young Park; Sampath Perumal; Murukarthick Jayakodi; Yun Sun Lee; Backki Kim; Dario Copetti; Soonok Kim; Sunggil Kim; Ki-Byung Lim; Young-Dong Kim; Jungho Lee; Kwang-Su Cho; Beom-Seok Park; Rod A Wing; Tae-Jin Yang
Journal:  Sci Rep       Date:  2015-10-28       Impact factor: 4.379

7.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

8.  Anti-inflammatory Effects of Sinomenium Acutum Extract On Endotoxin-induced Uveitis in Lewis Rats.

Authors:  Tae Wan Kim; Jeong Mo Han; Young Keun Han; Hokyung Chung
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  8 in total

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