Literature DB >> 33458016

The complete chloroplast genome sequence of Ulmus parvifolia (Ulmaceae).

Manyu Li1, Qingyang Chen1, Lin Zhang2, Peng Guo1, Yihan Wang1.   

Abstract

Ulmus parvifolia Jacq is a kind of landscape tree endemic to East Asia. In this study, the complete chloroplast genome of U. parvifolia was sequenced. The genome was 159,259 bp in length, with a large single-copy (LSC) region of 88,451 bp, a small single-copy (SSC) region of 19,598 bp, and two inverted repeat (IR) regions of 25,605 bp, each. The genome consisted of 121 genes, including 77 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The phylogenetic results indicated that Ulmus is not monophyletic and U. parvifolia constitute a well-supported clade sister to U. Sect. Ulmus. The complete chloroplast genome of U. parvifolia will provide important information for phylogenetic and evolutionary studies in Ulmaceae, as well as the other closely related families.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Ulmaceae; Ulmus parvifolia; chloroplast genome; phylogenetic analysis

Year:  2020        PMID: 33458016      PMCID: PMC7782882          DOI: 10.1080/23802359.2020.1791006

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

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Authors:  Marc Lohse; Oliver Drechsel; Ralph Bock
Journal:  Curr Genet       Date:  2007-10-24       Impact factor: 3.886

2.  Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs.

Authors:  Jun-Bo Yang; De-Zhu Li; Hong-Tao Li
Journal:  Mol Ecol Resour       Date:  2014-04-07       Impact factor: 7.090

3.  Micropropagation and germplasm conservation of Central Park Splendor Chinese elm (Ulmus parvifolia Jacq. 'A/Ross Central Park') trees.

Authors:  R C Thakur; D F Karnosky
Journal:  Plant Cell Rep       Date:  2007-03-13       Impact factor: 4.570

4.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

5.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

6.  CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

Authors:  Chang Liu; Linchun Shi; Yingjie Zhu; Haimei Chen; Jianhui Zhang; Xiaohan Lin; Xiaojun Guan
Journal:  BMC Genomics       Date:  2012-12-20       Impact factor: 3.969

  6 in total

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