Literature DB >> 33458007

The complete chloroplast genome of Tradescantia pallida (Rose) D.R.Hunt.

Jing Gao1, Mingying Zhang1, Sijing Guan1, Ying Chen1, Aping Liu1, Yonggang Yan1, Nan Wang2, Gang Zhang1.   

Abstract

In this study, the complete chloroplast genome of Tradescantia pallida (Rose) D.R.Hunt was investigated. The whole chloroplast genome sequence is 166,086 bp in length, which consists of a 94,376 bp large single copy (LSC) and an 18,678 bp small single copy (SSC) regions, separated by a pair of 26,518 bp inverted repeat (IR) regions. The chloroplast genome of T. pallida encodes 131 annotated known unique genes including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis based on chloroplast genome sequences demonstrated that T. pallida is most closely related to Belosynapsis ciliate.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chloroplast genome; Commelinaceae; phylogeny

Year:  2020        PMID： 33458007      PMCID： PMC7782135          DOI： 10.1080/23802359.2020.1787262

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  8 in total

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Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

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Journal:  Plant Physiol       Date:  1996-06       Impact factor: 8.340

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5.  Application of the MAFFT sequence alignment program to large data-reexamination of the usefulness of chained guide trees.

Authors:  Kazunori D Yamada; Kentaro Tomii; Kazutaka Katoh
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6.  The complete chloroplast genome sequence of Belosynapsis ciliata (Blume) R. S. Rao (Commelinaceae).

Authors:  Wei Guo; Yufen Xu; Wei Wu; Youhua Ye; Ping Chen
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-12       Impact factor: 0.658

7.  The chloroplast genome sequence of Commelina communis (Commelinaceae).

Authors:  Yong Cui; Rifan Liang
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-18       Impact factor: 0.658

8.  CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

Authors:  Chang Liu; Linchun Shi; Yingjie Zhu; Haimei Chen; Jianhui Zhang; Xiaohan Lin; Xiaojun Guan
Journal:  BMC Genomics       Date:  2012-12-20       Impact factor: 3.969
  8 in total

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