Literature DB >> 33457991

Characterization of the mitochondrial genome of Favonigobius reichei (Perciformes, Gobiidae).

Xiongbo He1,2, Murong Yi1,2, Yunrong Yan1,2,3,4, Yu-Min Ju5,6.   

Abstract

Favonigobius reichei, belongs to the family Gobiidae, which is widely distributed in estuarine and marine waters of the coasts of the Indian and the western Pacific Oceans. The entire mitochondrial genome of F. reichei is 16,415 base pairs (bp) in length and contained 13 protein-coding genes (PCGs), 2 ribosomal RNA (rRNA) genes, and 22 transfer RNA (tRNA) genes. The overall base composition is 27.71% A, 26.78% T, 28.02% C, and 17.49% G, showing AT-rich feature (54.49%). Phylogenetic analysis based on 13 PCGs shows the F. reichei has the closest evolutionary relationship with Myersina macrostoma. This work provides a valuable mitogenome resource for better understanding of the conservation genetics, environmental DNA, and population studies in the family Gobiidae.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Favonigobius reichei; mitochondrial genome; next-generation sequencing

Year:  2020        PMID: 33457991      PMCID: PMC7782015          DOI: 10.1080/23802359.2020.1791014

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

1.  PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.

Authors:  Dong Zhang; Fangluan Gao; Ivan Jakovlić; Hong Zou; Jin Zhang; Wen X Li; Gui T Wang
Journal:  Mol Ecol Resour       Date:  2019-11-06       Impact factor: 7.090

2.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

3.  Complete mitochondrial genome and the phylogenetic position of the pelagic octopus Tremoctopus violaceus (Mollusca: Tremoctopodidae).

Authors:  Yuh-Wen Chiu; Chih-Wei Chang; Kang-Ning Shen; Yu-Min Ju; Hung-Du Lin
Journal:  Mitochondrial DNA B Resour       Date:  2018-10-26       Impact factor: 0.658

4.  Characterization of the complete mitochondrial genome of the coral reef fish, Hemigymnus melapterus (Pisces: Labridae) and its phylogenetic implications.

Authors:  Murong Yi; Sui Gu; Zhisen Luo; Hung-Du Lin; Yunrong Yan
Journal:  Mitochondrial DNA B Resour       Date:  2019-11-20       Impact factor: 0.658

  4 in total
  1 in total

1.  Characterization of the mitochondrial genome of parupeneus indicus (perciformes, mullidae).

Authors:  Xiongbo He; Zhisen Luo; Murong Yi; Yunrong Yan
Journal:  Mitochondrial DNA B Resour       Date:  2022-05-12       Impact factor: 0.610

  1 in total

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