Literature DB >> 33457987

Complete mitochondrial genomes provide current refined phylogenomic hypotheses for relationships among ten Hirundo species.

Javan K Carter1, Peter Innes1, April M Goebl1, Benjamin Johnson1, Matthew Gebert1, Ziv Attia1, Zachariah Gabani1, Ruiqi Li1, Tina Melie1, Chiara Dart1, Ali Mares1, Chrisopher Greidanus1, Jaime Paterson1, Brianna Wall1, Gabriela Cortese1, Kevin Thirouin1, Gabrielle Glime1, Joseph Rutten1, Cameron Poyd1, Erin Post1, Brianna Wall1, Ahmed A Elhadi1, Katherine Feldmann1, August Danz1, Thomas Blanchard1, Samantha Amato1, Stephan Reinert1, Cloe S Pogoda1, Elizabeth S C Scordato2, Amanda K Hund1,3, Rebecca J Safran1, Nolan C Kane1.   

Abstract

Hirundo is the most species-rich genus of the passerine swallow family (Hirundinidae) and has a cosmopolitan distribution. Here we report the complete, annotated mitochondrial genomes for 25 individuals from 10 of the 14 extant Hirundo species; these include representatives from four subspecies of the barn swallow, H. rustica. Mitogenomes were conserved in size, ranging from 18,500 to 18,700 base pairs. They all contained 13 protein-coding regions, 22 tRNAs, a control region, and large and small ribosomal subunits. Phylogenetic analysis resolved most of the relationships between the studied species and subspecies which were largely consistent with previously published trees. Several new relationships were observed within the phylogeny that could have only been discovered with the increased amount of genetic material. This study represents the largest Hirundo mitochondrial phylogeny to date, and could serve as a vital tool for other studies focusing on the evolution of the Hirundo genus.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Hirundo; mitogenome; phylogenetic; phylogenomic

Year:  2020        PMID: 33457987      PMCID: PMC7783031          DOI: 10.1080/23802359.2020.1790999

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  15 in total

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Authors:  Wayne P Maddison; L Lacey Knowles
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4.  Phylogeny of swallows (Aves: Hirundinidae) estimated from nuclear and mitochondrial DNA sequences.

Authors:  Frederick H Sheldon; Linda A Whittingham; Robert G Moyle; Beth Slikas; David W Winkler
Journal:  Mol Phylogenet Evol       Date:  2005-01-20       Impact factor: 4.286

5.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

6.  Complete mitochondrial genomes of eleven extinct or possibly extinct bird species.

Authors:  Jarl A Anmarkrud; Jan T Lifjeld
Journal:  Mol Ecol Resour       Date:  2016-10-11       Impact factor: 7.090

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Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

8.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

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Authors:  Wataru Iwasaki; Tsukasa Fukunaga; Ryota Isagozawa; Koichiro Yamada; Yasunobu Maeda; Takashi P Satoh; Tetsuya Sado; Kohji Mabuchi; Hirohiko Takeshima; Masaki Miya; Mutsumi Nishida
Journal:  Mol Biol Evol       Date:  2013-08-16       Impact factor: 16.240

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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  1 in total

1.  The Mitogenome Relationships and Phylogeography of Barn Swallows (Hirundo rustica).

Authors:  Gianluca Lombardo; Nicola Rambaldi Migliore; Giulia Colombo; Marco Rosario Capodiferro; Giulio Formenti; Manuela Caprioli; Elisabetta Moroni; Leonardo Caporali; Hovirag Lancioni; Simona Secomandi; Guido Roberto Gallo; Alessandra Costanzo; Andrea Romano; Maria Garofalo; Cristina Cereda; Valerio Carelli; Lauren Gillespie; Yang Liu; Yosef Kiat; Alfonso Marzal; Cosme López-Calderón; Javier Balbontín; Timothy A Mousseau; Piotr Matyjasiak; Anders Pape Møller; Ornella Semino; Roberto Ambrosini; Andrea Bonisoli-Alquati; Diego Rubolini; Luca Ferretti; Alessandro Achilli; Luca Gianfranceschi; Anna Olivieri; Antonio Torroni
Journal:  Mol Biol Evol       Date:  2022-06-02       Impact factor: 8.800

  1 in total

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