Literature DB >> 33457985

The complete chloroplast genome sequences of the Iris loczyi kanitz (Iridaceae).

Tae-Young Choi1, Seung-Hwan Oh1, Chang-Gee Jang2, Hae-Won Kim1, Aleksey Kim1, Soo-Rang Lee1.   

Abstract

Iris loczyi is a perennial rhizomatous herb distributed in Central Asia. We examined genomic architecture of the complete chloroplast genome in I. loczyi by assembling the Illumina MiSeq reads using de novo strategy. The chloroplast genome is 150,940 bp in length harboring 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. It exhibits typical quadripartite structure comprising LSC (80,907 bp), SSC (17,853 bp), and a pair of IRs (26,090 bp). Phylogenetic analysis of 20 chloroplast genomes from Asparagales revealed that Iridaceae is a monophyletic group and the I. loczyi is clustered together with the congener, I. sanguinea.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Iridaceae; Iris loczyi; complete chloroplast genome

Year:  2020        PMID： 33457985      PMCID： PMC7781908          DOI： 10.1080/23802359.2020.1790312

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  6 in total

1.  Phylogeny of Iris based on chloroplast matK gene and trnK intron sequence data.

Authors:  Carol A Wilson
Journal:  Mol Phylogenet Evol       Date:  2004-11       Impact factor: 4.286

2.  Studies on α-glucosidase inhibition and anti-glycation potential of Iris loczyi and Iris unguicularis.

Authors:  Mohmmed Mosihuzzman; Suad Naheed; Sumaira Hareem; Sumaira Talib; Ghulam Abbas; Shamsun Nahar Khan; Muhammad Iqbal Choudhary; Bilge Sener; Rasool Baksh Tareen; Mudassir Israr
Journal:  Life Sci       Date:  2012-12-24       Impact factor: 5.037

3.  Comprehensive Survey of Genetic Diversity in Chloroplast Genomes and 45S nrDNAs within Panax ginseng Species.

Authors:  Kyunghee Kim; Sang-Choon Lee; Junki Lee; Hyun Oh Lee; Ho Jun Joh; Nam-Hoon Kim; Hyun-Seung Park; Tae-Jin Yang
Journal:  PLoS One       Date:  2015-06-10       Impact factor: 3.240

4.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

5.  MISA-web: a web server for microsatellite prediction.

Authors:  Sebastian Beier; Thomas Thiel; Thomas Münch; Uwe Scholz; Martin Mascher
Journal:  Bioinformatics       Date:  2017-08-15       Impact factor: 6.937

6.  MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

Authors:  Kazutaka Katoh; John Rozewicki; Kazunori D Yamada
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622
  6 in total
  3 in total

1.  Comparative analysis of two Korean irises (Iris ruthenica and I. uniflora, Iridaceae) based on plastome sequencing and micromorphology.

Authors:  Bokyung Choi; Inkyu Park; Soonku So; Hyeon-Ho Myeong; Jangseung Ryu; Yu-Eun Ahn; Kyu-Chan Shim; Jun-Ho Song; Tae-Soo Jang
Journal:  Sci Rep       Date:  2022-06-08       Impact factor: 4.996

2.  Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four Iris Species.

Authors:  Jing-Lu Feng; Li-Wei Wu; Qing Wang; Yun-Jia Pan; Bao-Li Li; Yu-Lin Lin; Hui Yao
Journal:  Biomed Res Int       Date:  2022-07-27       Impact factor: 3.246

3.  The chloroplast genome of the Iris japonica Thunberg (Butterfly flower) reveals the genomic and evolutionary characteristics of Iris species.

Authors:  Xinyi Zhang; Heyu Yang; Bin Wu; Haimei Chen
Journal:  Mitochondrial DNA B Resour       Date:  2022-10-11       Impact factor: 0.610
  3 in total

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