Literature DB >> 33457968

The complete chloroplast genome sequence of economical standard tea plant, Camellia sinensis L. cultivar Sangmok, in Korea.

Dong-Jun Lee1, Chang-Kug Kim1, Tae-Ho Lee1, So-Jin Lee2, Doo-Gyung Moon2, Yong-Hee Kwon2, Jeong-Yong Cho3.   

Abstract

The complete chloroplast genome sequence of Camellia sinensis L. cultivar Sangmok was determined using high-throughput sequencing technology. We sequenced Sangmok chloroplast genome and performed comparative with 21 published other Camellia and species from different genus for phylogenetic analysis. Chloroplast genome was 153,044 bp in length, containing a pair of 24,627 bp inverted repeat (IR) regions, which were separated by small and large single-copy regions (SSC and LSC) of 19,155 and 64,665 bp, respectively. The chloroplast genome contained 97 genes (63 protein-coding genes, 29 tRNA genes, and 5 rRNA genes). The overall GC content of the chloroplast genome was 37.2%. The phylogenetic analysis among species in number of the genus Camellia provided that C. sinensis L. cultivar Sangmok is closely related to KJ806277 Camellia pubicosta.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Camellia sinensis L; Korea; Sangmok; chloroplast genome

Year:  2020        PMID: 33457968      PMCID: PMC7782013          DOI: 10.1080/23802359.2020.1790311

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

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3.  Comparative chloroplast genomes of camellia species.

Authors:  Jun-Bo Yang; Shi-Xiong Yang; Hong-Tao Li; Jing Yang; De-Zhu Li
Journal:  PLoS One       Date:  2013-08-23       Impact factor: 3.240

4.  The complete chloroplast genome of an economic plant, Camellia sinensis cultivar Anhua, China.

Authors:  Meng Dong; Shiquan Liu; Zhenggang Xu; Zhiyuan Hu; Wenzhen Ku; Liang Wu
Journal:  Mitochondrial DNA B Resour       Date:  2018-05-10       Impact factor: 0.658

5.  GapFiller: a de novo assembly approach to fill the gap within paired reads.

Authors:  Francesca Nadalin; Francesco Vezzi; Alberto Policriti
Journal:  BMC Bioinformatics       Date:  2012-09-07       Impact factor: 3.169

6.  From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes.

Authors:  Brad R Ruhfel; Matthew A Gitzendanner; Pamela S Soltis; Douglas E Soltis; J Gordon Burleigh
Journal:  BMC Evol Biol       Date:  2014-02-17       Impact factor: 3.260

7.  Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships.

Authors:  Hui Huang; Chao Shi; Yuan Liu; Shu-Yan Mao; Li-Zhi Gao
Journal:  BMC Evol Biol       Date:  2014-07-07       Impact factor: 3.260

  7 in total

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