Literature DB >> 33457954

The complete mitochondrial genome of Pseudocolochirus violaceus (Cucumariidae, Dendrochirotida).

Yan Wang1, Ling Zeng2, Jing Wen3, Xuyan Li3, Yafen Huang3, Yulin Sun3, Juan Zhao3.   

Abstract

The complete mitochondrial genome of Pseudocolochirus violaceus was obtained and described in this study. This complete mitochondrial genome is 15,752 bp in length and consists of 13 protein-coding genes, 2 ribosomal RNA genes, and 22 transfer RNA genes. Except ND6 and 5 tRNAs, the others were encoded by the heavy strand. The overall base composition of the heavy-strand was 38.65% A, 12.09% G, 24.31% C, and 24.95% T, with a high A + T content of 63.6%. The phylogenetic analysis suggested that P. violaceus was closest to Cucumaria miniata. The newly described mitochondrial genome may provide valuable data for phylogenetic analysis for Holothuroidea.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Pseudocolochirus violaceus; mitochondrial genome; phylogeny

Year:  2020        PMID: 33457954      PMCID: PMC7782155          DOI: 10.1080/23802359.2020.1788455

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  2 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.

Authors:  Todd M Lowe; Patricia P Chan
Journal:  Nucleic Acids Res       Date:  2016-05-12       Impact factor: 16.971

  2 in total
  1 in total

1.  Complete mitochondrial genome of a sea cucumber, Euapta godeffroyi (Echinodermata, Holothuroidea, Apodida, Synaptidae).

Authors:  Akito Ogawa; Shimpei F Hiruta; Mu Mu Aung; Toshihiko Fujita
Journal:  Mitochondrial DNA B Resour       Date:  2022-08-08       Impact factor: 0.610

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.