Literature DB >> 33457953

Characterization of the complete chloroplast genome sequence of the medicinal plant Mirabilis himalaica.

Fang Yuan1, Yuanjiang Xu1, Kaihui Zhao1, Yazhou Lu1, Xiaozhong Lan1.   

Abstract

Mirabilis himalaica is an old and popular medicinal plant used in traditional Tibetan folk medicine. Here, we reported the complete chloroplast genome sequence of Mirabilis himalaica. The assembled chloroplast genome was 154,348 bp long, containing a large single-copy region of 85,809 bp, a small single-copy region of 17,935 bp, and a pair of inverted repeat regions of 25,302 bp. It had 36% GC content and encoded 131 genes including 86 protein-coding genes, eight rRNA genes, and 37 tRNA. Fifteen and two genes contained one and two introns, respectively. Phylogenetic analysis revealed that Mirabilis himalaica was sister to Nyctaginia capitata.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Endangered species; Mirabilis himalaica; chloroplast genome; conservation

Year:  2020        PMID: 33457953      PMCID: PMC7782936          DOI: 10.1080/23802359.2020.1788449

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

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Authors:  Lan-Ping Guo; Yan Zhang; Shou-Dong Zhu; Gui-Hua Wang; Xiu Wang; Xiao-Bo Zhang; Mei-Lan Chen; Ya-Li He; Bang-Xing Han; Nai-Fu Chen; Lu-Qi Huang
Journal:  Zhongguo Zhong Yao Za Zhi       Date:  2014-04

2.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

3.  CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

Authors:  Chang Liu; Linchun Shi; Yingjie Zhu; Haimei Chen; Jianhui Zhang; Xiaohan Lin; Xiaojun Guan
Journal:  BMC Genomics       Date:  2012-12-20       Impact factor: 3.969

4.  Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors:  Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal:  Nucleic Acids Res       Date:  2013-05-09       Impact factor: 16.971

  4 in total

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