Literature DB >> 33457944

The complete chloroplast genome of Allium ferganicum.

Lufeng Liu1,2, Ziyoviddin Yusupov3,4,5, Hikmatullo Suyunkulov6, Zhilin Jiang2.   

Abstract

The complete chloroplast (cp) genome of Allium ferganicum was sequenced and annotated. The whole chloroplast genome consists of 153,126 bp with a typical quadripartite structure separated by a pair of 26,556 bp inverted repeat (IR) regions. The structure also includes the large single copy (LSC) - 81,982 bp and the small single copy (SSC) - 18,033 bp. The A. ferganicum chloroplast genome encodes 114 unique genes including 80 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The phylogenetic trees for 35 plastomes genomes showed that A. ferganicum is closely related to A. sativum (garlic) and A. ampeloprasum (leek).
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Allium; chloroplast genome; phylogenetic analysis

Year:  2020        PMID： 33457944      PMCID： PMC7782899          DOI： 10.1080/23802359.2020.1788454

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


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1.  Seed macro- and micromorphology in Allium (Amaryllidaceae) and its phylogenetic significance.

Authors:  Ziyoviddin Yusupov; Ibrokhimjon Ergashov; Sergei Volis; Dilmurod Makhmudjanov; Davron Dekhkonov; Furkat Khassanov; Komiljon Tojibaev; Tao Deng; Hang Sun
Journal:  Ann Bot       Date:  2022-07-18       Impact factor: 5.040

2.  Complete chloroplast genome of the rare medicinal vegetable Allium hookeri.

Authors:  Fengming Ren; Liqiang Wang; Wei Zhuo; Dongliang Chen; Hongyan Huang; Lansheng Zhang
Journal:  Mitochondrial DNA B Resour       Date:  2021-12-09       Impact factor: 0.658

3.  Gene Loss, Pseudogenization in Plastomes of Genus Allium (Amaryllidaceae), and Putative Selection for Adaptation to Environmental Conditions.

Authors:  Victoria A Scobeyeva; Ilya V Artyushin; Anastasiya A Krinitsina; Pavel A Nikitin; Maxim I Antipin; Sergei V Kuptsov; Maxim S Belenikin; Denis O Omelchenko; Maria D Logacheva; Evgenii A Konorov; Andrey E Samoilov; Anna S Speranskaya
Journal:  Front Genet       Date:  2021-07-08       Impact factor: 4.599
  3 in total

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