Literature DB >> 33457932

The complete chloroplast genome sequence of Trapa bicornis Osbeck (Lythraceae).

Fangfang Sun1, Yulai Yin1, Bowen Xue1, Ronghua Zhou1, Jun Xu1.   

Abstract

Trapa (Lythraceae) is an aquatic plant genus widely distributed in the old world. Although Trapa species have great edible and medical value, studies related to species identification and utilization are still lacking. Here, we reported the complete chloroplast genome sequence of a cultivated species, T. bicornis. The chloroplast genome size of T. bicornis was 155,539 bp, consisting of a pair of inverted repeat (IR) regions (24,386 bp), separated by a large single copy (LSC) region (88,493 bp) and a small single copy (SSC) region (18,274 bp). A total of 130 genes were annotated, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenomic analysis supported the monophyly of Trapa, and a sister relationship between T. bicornis and T. natans.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Lythraceae; Trapa bicornis; chloroplast genome; phylogeny

Year:  2020        PMID: 33457932      PMCID: PMC7782891          DOI: 10.1080/23802359.2020.1788432

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  5 in total

1.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

Authors:  Stéphane Guindon; Jean-François Dufayard; Vincent Lefort; Maria Anisimova; Wim Hordijk; Olivier Gascuel
Journal:  Syst Biol       Date:  2010-03-29       Impact factor: 15.683

2.  Divergence times, historical biogeography, and shifts in speciation rates of Myrtales.

Authors:  Brent A Berger; Ricardo Kriebel; Daniel Spalink; Kenneth J Sytsma
Journal:  Mol Phylogenet Evol       Date:  2015-11-14       Impact factor: 4.286

3.  Molecular genotyping of Trapa bispinosa and T. japonica (Trapaceae) based on nuclear AP2 and chloroplast DNA trnL-F region.

Authors:  Changkyun Kim; Hye Ryun Na; Hong-Keun Choi
Journal:  Am J Bot       Date:  2010-11-18       Impact factor: 3.844

4.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

5.  The first complete chloroplast genome of a major mangrove species Sonneratia alba Sm. and its implications on conservation efforts.

Authors:  Tianhui Yu; Damien Daniel Hinsinger; Joeri Sergej Strijk; Alison Kim Shan Wee
Journal:  Mitochondrial DNA B Resour       Date:  2018-04-23       Impact factor: 0.658

  5 in total
  2 in total

1.  The complete chloroplast genome sequence of Trapa kozhevnikoviorum Pshenn. (Lythraceae).

Authors:  Godfrey Kinyori Wagutu; Xiangrong Fan; Wuchao Wang; Wei Li; Yuanyuan Chen
Journal:  Mitochondrial DNA B Resour       Date:  2021-05-19       Impact factor: 0.658

2.  Fifteen complete chloroplast genomes of Trapa species (Trapaceae): insight into genome structure, comparative analysis and phylogenetic relationships.

Authors:  Xiangrong Fan; Wuchao Wang; Godfrey K Wagutu; Wei Li; Xiuling Li; Yuanyuan Chen
Journal:  BMC Plant Biol       Date:  2022-05-05       Impact factor: 5.260

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.