Literature DB >> 33457924

Plastid genome of stonecrop Hylotelephium verticillatum (Sedoideae; Crassulaceae): insight into structure and phylogenetic position.

Seon-Hee Kim1, Seung-Chul Kim1.   

Abstract

The first complete chloroplast genome sequence of Hylotelephium verticillatum, was reported in this study. The plastome size was 151,398 bp in total length, with one large single copy (LSC; 82,951 bp), one small single copy (SSC; 16,839 bp), and two inverted repeat (IR) regions (IRa and IRb, each with 25,804 bp). The overall GC content was 37.8% and the genome contained 128 genes, including 85 protein-coding, 37 transfer RNA, and 6 ribosomal RNA genes. Phylogenetic analysis of 15 representative plastomes within the family Crassulaceae suggests that H. verticillatum is sister to congeneric H. ewersii.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chloroplast genome; Crassulaceae; Hylotelephium verticillatum; Sedoideae; Sedum sensu lato

Year:  2020        PMID: 33457924      PMCID: PMC7782919          DOI: 10.1080/23802359.2020.1788464

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  [Phylogenetic relationships among members of the subfamily sedoideae (Crassulaceae) inferred from the ITS region sequences of nuclear rDNA].

Authors:  S B Goncharova; E V Artiukova; A A Goncharov
Journal:  Genetika       Date:  2006-06

3.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

4.  [Molecular phylogeny and systematics of flowering plants of the family Crassulaceae DC].

Authors:  S B Goncharova; A A Goncharov
Journal:  Mol Biol (Mosk)       Date:  2009 Sep-Oct

5.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

6.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

7.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

  7 in total
  1 in total

1.  The Conservation of Chloroplast Genome Structure and Improved Resolution of Infrafamilial Relationships of Crassulaceae.

Authors:  Hong Chang; Lei Zhang; Huanhuan Xie; Jianquan Liu; Zhenxiang Xi; Xiaoting Xu
Journal:  Front Plant Sci       Date:  2021-07-01       Impact factor: 5.753

  1 in total

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