Literature DB >> 33457923

The complete chloroplast genome sequence of Viola prionantha (Violaceae).

Chunyan Duan1, Kay Zhang2, YiZhong Duan2.   

Abstract

Viola Prionantha belongs to the family Violaceae. It has been widely used for a traditional Chinese herb with antibacterial activity and is grown as an early spring ornamental species in China. In this study, we determined the complete chloroplast genome sequence of V. prionantha which forms a circular structure. The whole chloroplast genome was 156,501 bp in length, consisting of a pair of inverted repeats (IR) of 26,404 bp, a large single-copy (LSC) region of 85,689 bp, and a small single-copy (SSC) region of 18,004 bp. We annotated 131 genes, including 84 coding sequences, 8 rRNA sequences, 37 tRNA sequences and 2 pesudogenes. Among the annotated genes, 17 genes contained one or two introns. Furthermore, a phylogenetic analysis revealed that V. prionantha and V. seoulensis clustered together as sisters to other Violaceae species.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Viola Prionantha; Violaceae; chloroplast genome; phylogenetic

Year:  2020        PMID: 33457923      PMCID: PMC7781978          DOI: 10.1080/23802359.2020.1788456

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

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4.  The complete chloroplast genome sequences of four Viola species (Violaceae) and comparative analyses with its congeneric species.

Authors:  Kyeong-Sik Cheon; Kyung-Ah Kim; Myounghai Kwak; Byoungyoon Lee; Ki-Oug Yoo
Journal:  PLoS One       Date:  2019-03-20       Impact factor: 3.240

5.  OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes.

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6.  CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

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  6 in total

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