Literature DB >> 33457888

The complete chloroplast genome sequence of Ormosia formosana.

Zheng-Feng Wang1,2,3, Li-Wan Chang4, Ju-Yu Lian1,2,3, Hong-Lin Cao1,2,3.   

Abstract

Ormosia formosana is an important hardwood species and its seeds are popular as decorative jewelry. Currently, this species is threatened in the natural forests due to habitat destruction. Here, we first report the chloroplast genome of O. formosana for future studies in ecology, phylogeny, and conservation. The chloroplast genome of O. formosana is 173,587 bp in length with a GC content of 35.80%. It includes a large single-copy region of 73,550 bp, a small single-copy region of 18,683 bp, and two inverted repeat regions of 40,696 bp and 40,658 bp, respectively. The genome was totally annotated with 135 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 37 transfer RNA genes. Phylogenetic analysis indicated that O. formosana is most genetically similar to O. boluoensis.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Chloroplast; Ormosia formosana; genome assembly; high-throughput sequencing

Year:  2020        PMID: 33457888      PMCID: PMC7782045          DOI: 10.1080/23802359.2020.1782278

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


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Authors:  J P Huelsenbeck; F Ronquist
Journal:  Bioinformatics       Date:  2001-08       Impact factor: 6.937

2.  PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.

Authors:  Dong Zhang; Fangluan Gao; Ivan Jakovlić; Hong Zou; Jin Zhang; Wen X Li; Gui T Wang
Journal:  Mol Ecol Resour       Date:  2019-11-06       Impact factor: 7.090

3.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

4.  PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.

Authors:  Xiao-Jian Qu; Michael J Moore; De-Zhu Li; Ting-Shuang Yi
Journal:  Plant Methods       Date:  2019-05-21       Impact factor: 4.993

  4 in total
  1 in total

1.  The complete mitochondrial genome of Ormosia boluoensis.

Authors:  Zheng-Feng Wang; Yue Zhang; Xiang-Jing Zhong; Ning Kang; Hong-Lin Cao
Journal:  Mitochondrial DNA B Resour       Date:  2021-06-28       Impact factor: 0.658

  1 in total

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