Literature DB >> 33457875

The complete chloroplast genome of Apocynum venetum (Apocynaceae).

Lianying Chang1, Xiaolei Yu2, Wenxiu Wang2, Xiaoxuan Tian2,3.   

Abstract

Apocynum venetum (A. venetum) has high medicinal value that belongs to the family Apocynaceae. Here, we reported the complete chloroplast (cp) genome of A. venetum, which was 150,858 bp in length. The cp genome was characterized by a typical quadripartite structure composed of a large single-copy region (LSC 81,919 bp) and a small single-copy region (SSC 17,257 bp) interspersed by a pair of 25,841 bp inverted repeat regions (IRs), and it contained 86 protein-coding genes, eight rRNAs, and 37 tRNAs. A maximum-likelihood (ML) phylogenetic tree indicated that A. venetum was closely related to Trachelospermum jasminoides.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Apocynum venetum; chloroplast genome

Year:  2020        PMID: 33457875      PMCID: PMC7782900          DOI: 10.1080/23802359.2020.1781567

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  11 in total

Review 1.  Botany, traditional uses, phytochemistry and pharmacology of Apocynum venetum L. (Luobuma): A review.

Authors:  Wenyan Xie; Xiaoying Zhang; Tian Wang; Jianjun Hu
Journal:  J Ethnopharmacol       Date:  2012-03-06       Impact factor: 4.360

2.  Anti-anxiety effects of Apocynum venetum L. in the elevated plus maze test.

Authors:  Oliver Grundmann; Jun-Ichiro Nakajima; Shujiro Seo; Veronika Butterweck
Journal:  J Ethnopharmacol       Date:  2006-10-13       Impact factor: 4.360

3.  Kaempferol from the leaves of Apocynum venetum possesses anxiolytic activities in the elevated plus maze test in mice.

Authors:  Oliver Grundmann; Jun-Ichiro Nakajima; Kazuaki Kamata; Shujiro Seo; Veronika Butterweck
Journal:  Phytomedicine       Date:  2009-04       Impact factor: 5.340

4.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

5.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

6.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

7.  The Complete Chloroplast Genomes of Punica granatum and a Comparison with Other Species in Lythraceae.

Authors:  Ming Yan; Xueqing Zhao; Jianqing Zhou; Yan Huo; Yu Ding; Zhaohe Yuan
Journal:  Int J Mol Sci       Date:  2019-06-13       Impact factor: 5.923

8.  Comparative and Phylogenetic Analyses of Ginger (Zingiber officinale) in the Family Zingiberaceae Based on the Complete Chloroplast Genome.

Authors:  Yingxian Cui; Liping Nie; Wei Sun; Zhichao Xu; Yu Wang; Jing Yu; Jingyuan Song; Hui Yao
Journal:  Plants (Basel)       Date:  2019-08-12

9.  Complete Chloroplast Genomes of Ampelopsis humulifolia and Ampelopsis japonica: Molecular Structure, Comparative Analysis, and Phylogenetic Analysis.

Authors:  Xiaolei Yu; Wei Tan; Huanyu Zhang; Han Gao; Wenxiu Wang; Xiaoxuan Tian
Journal:  Plants (Basel)       Date:  2019-10-14

10.  The complete chloroplast genomes of three Betulaceae species: implications for molecular phylogeny and historical biogeography.

Authors:  Zhen Yang; Guixi Wang; Qinghua Ma; Wenxu Ma; Lisong Liang; Tiantian Zhao
Journal:  PeerJ       Date:  2019-01-25       Impact factor: 2.984

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  1 in total

1.  The chloroplast genome sequence and phylogenetic analysis of Apocynum venetum L.

Authors:  Xiaonong Guo; Zhuanxia Wang; Deyu Cai; Lei Song; Jialin Bai
Journal:  PLoS One       Date:  2022-03-10       Impact factor: 3.240

  1 in total

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