Literature DB >> 33457860

The complete chloroplast genome of Abies georgei Orr var. smithii, a species endemic to the Qinghai-Tibet Plateau, China.

Jiang-Rong Li1,2, Jia-Rui Chen1,2, Jian-Ke Wang1,2, Wei-Lie Zheng1,2.   

Abstract

Abies georgei Orr var. smithii is an evergreen coniferous species of Pinaceae, and is endemic to the Qinghai-Tibet Plateau of China. Considering its vital ecological functions in this unique area, the complete chloroplast (cp) genome was constructed in this study to provide genetic information for its further study of conservation and evolution. The complete cp genome is 121,213 bp in length with GC content of 38.3%, and contains a tetrad structure, including a large single copy region of 76,278 bp, a small single copy of 42,575 bp, and two very short repeats of 1,180 bp for each. Besides, it contains 113 genes in total, including 74 CDSs, 35 tRNAs, and four rRNAs. This genome has been deposited in Genbank under accession number of MT527722.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Coniferous; Pinaceae; phylogeny; plastid genome

Year:  2020        PMID: 33457860      PMCID: PMC7783149          DOI: 10.1080/23802359.2020.1780981

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

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Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

2.  Characterization of the complete chloroplast genome of Abies chensiensis (Pinaceae), an endemic to China.

Authors:  Yuemei Zhao; Tao Zhou; Xiaodan Chen; Xiao Zhang; Guoqing Bai; Guifang Zhao
Journal:  Mitochondrial DNA B Resour       Date:  2018-11-21       Impact factor: 0.658

3.  Completed plastome sequence of Sophora moorcroftiana, an endemic shrub to the Qinghai-Tibet Plateau, China.

Authors:  Huie Li; Lan Yang; Qian Li; Jiangrong Li
Journal:  Mitochondrial DNA B Resour       Date:  2019-11-21       Impact factor: 0.658

4.  Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors:  Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal:  Nucleic Acids Res       Date:  2013-05-09       Impact factor: 16.971

5.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

6.  Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species.

Authors:  Adam Healey; Agnelo Furtado; Tal Cooper; Robert J Henry
Journal:  Plant Methods       Date:  2014-06-27       Impact factor: 4.993

  6 in total
  1 in total

1.  The complete chloroplast genome of Abies ernestii Rehder (Pinaceae) and its phylogenetic implications.

Authors:  Yi-Zhen Shao; Zhi-Yuan Shi; Zhao Wang; Wei Wang; Yun Chen; Qian Wen
Journal:  Mitochondrial DNA B Resour       Date:  2022-08-17       Impact factor: 0.610

  1 in total

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