Literature DB >> 33457847

Characterization of the complete mitochondrial genome of the Pohlia nutans M211 from Antarctica.

Junhan Cao1,2, Xihong Yang1, Yanfeng Wang1,2, Yingying He2, Changfeng Qu2,3, Jinlai Miao1,2,3.   

Abstract

The complete mitochondrial genome of Pohlia nutans M211, sequenced using Illumina NovaSeq PE150, was 99864 bp in length. It encoded 65 genes, comprising 38 protein-coding genes, 24 tRNA genes and 3 ribosomal RNA genes. For these 38 PCGs, the most common start codon was ATG and the most common termination codon was TAA. The total GC content was 36.91% while the composition of A + T was 60.39%. Phylogenomic analysis indicated that P. nutans M211 was closely related to Mielichhoferia elongate.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Pohlia nutans M211; mitochondrial genome; phylogenetic analysis

Year:  2020        PMID： 33457847      PMCID： PMC7782848          DOI： 10.1080/23802359.2020.1780980

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  6 in total

1.  GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.

Authors:  J Besemer; A Lomsadze; M Borodovsky
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2.  Ecophysiology of Antarctic vascular plants.

Authors:  Miren Alberdi; León A Bravo; Ana Gutiérrez; Manuel Gidekel; Luis J Corcuera
Journal:  Physiol Plant       Date:  2002-08       Impact factor: 4.500

3.  Climate change and the microbiology of the Antarctic Peninsula region.

Authors:  David A Pearce
Journal:  Sci Prog       Date:  2008       Impact factor: 2.774

4.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

5.  Portable lysis apparatus for rapid single-step DNA extraction of Bacillus subtilis.

Authors:  H J Lim; E-H Lee; Y Yoon; B Chua; A Son
Journal:  J Appl Microbiol       Date:  2016-02       Impact factor: 3.772

6.  Characterization of the complete chloroplast genome of the Pohlia nutans M211 from Antarctica.

Authors:  Qing Jin; Liping Zhang; Dan Li; Yingying He; Changfeng Qu; Jinlai Miao
Journal:  Mitochondrial DNA B Resour       Date:  2020-02-11       Impact factor: 0.658
  6 in total

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