Literature DB >> 33457842

Complete mitochondrial genome of the water vole, Microtus richardsoni (Cricetidae, Rodentia).

Fahad Alqahtani1,2, Drew Duckett3, Stacy Pirro4, Ion I Mandoiu1.   

Abstract

Water voles (Microtus richardsoni) are sensitive species distributed in the mountains of Canada (Alberta, British Columbia), and the United States of America (Idaho, Montana, Oregon, Utah, Washington, and Wyoming). We assembled the complete circular M. richardsoni mitogenome, which is 16,285 bp in length and encodes 13 protein-coding genes, 22 tRNA genes, and two rRNA genes. We estimated the phylogenetic tree of M. richardsoni and 24 related arvicoline species with two outgroup species: Phodopus roborovskii and Cricetus cricetus.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Cricetidae; Microtus richardsoni; Rodentia; Water vole; complete mitochondrial genome

Year:  2020        PMID： 33457842      PMCID： PMC7782294          DOI： 10.1080/23802359.2020.1780640

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  5 in total

1.  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.

Authors:  Kazutaka Katoh; Kazuharu Misawa; Kei-ichi Kuma; Takashi Miyata
Journal:  Nucleic Acids Res       Date:  2002-07-15       Impact factor: 16.971

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  jModelTest: phylogenetic model averaging.

Authors:  David Posada
Journal:  Mol Biol Evol       Date:  2008-04-08       Impact factor: 16.240

4.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

5.  BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

Authors:  Remco Bouckaert; Timothy G Vaughan; Joëlle Barido-Sottani; Sebastián Duchêne; Mathieu Fourment; Alexandra Gavryushkina; Joseph Heled; Graham Jones; Denise Kühnert; Nicola De Maio; Michael Matschiner; Fábio K Mendes; Nicola F Müller; Huw A Ogilvie; Louis du Plessis; Alex Popinga; Andrew Rambaut; David Rasmussen; Igor Siveroni; Marc A Suchard; Chieh-Hsi Wu; Dong Xie; Chi Zhang; Tanja Stadler; Alexei J Drummond
Journal:  PLoS Comput Biol       Date:  2019-04-08       Impact factor: 4.475
  5 in total
  1 in total

1.  Mitochondrial Genome Evolution, Genetic Diversity, and Population Structure in British Water Voles (Arvicola amphibius).

Authors:  Corey Kirkland; Marta Farré
Journal:  Genes (Basel)       Date:  2021-01-21       Impact factor: 4.096
  1 in total

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