Literature DB >> 33457839

Complete chloroplast genomes of E. umbellata Thunb., E. multiflora Thunb., E. macrophylla Thunb., and E. glabra Thunb. (Elaeagnaceae).

Yonguk Kim1, Jawon Shin1, Dong-Wook Kim2, Hak-Sung Lee1, Chulyung Choi1.   

Abstract

Elaeagnus is a genus which consists about 70 species of flowering plants in the family Elaeagnaceae, and its edible fruit is a natural product used as food and in traditional medicine. In this study, we sequenced the complete chloroplast (cp) genome of four species, namely Elaeagnus umbellate Thunb., E. multiflora Thunb., E. macrophylla Thunb., and E. glabra Thunb., to study their phylogenetic relationships within the Elaeagnaceae. Total lengths of the chloroplast genome were 152,261 bp, 152,267 bp, 152,224 bp, and 152,227 bp, respectively. The four genomes had representative quadripartite structures, with an LSC region (82,207 bp, 82,191 bp, 82,136 bp, and 82,139 bp) and an SSC region (18,262 bp, 18,282 bp,and 18,278 bp for both species) separated by a pair of IRs (25,896 bp, 25,897 bp, and 25,905 bp for the latter two species), respectively. Moreover, they were composed of 136-137 genes, including 88 protein-coding genes, 40-41 tRNA genes, and 8 rRNA genes. A maximum likelihood phylogenetic analysis indicated that E. umbellata was most closely related to E. multiflora, whereas E. macrophylla was close to E. glabra.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Elaeagnaceae; Elaeagnus glabra; Elaeagnus macrophylla; Elaeagnus multiflora; Elaeagnus umbellata; complete chloroplast genome; phylogenetic analysis

Year:  2020        PMID: 33457839      PMCID: PMC7782260          DOI: 10.1080/23802359.2020.1779142

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

2.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

3.  Methanol extract of Elaeagnus glabra, a Korean medicinal plant, inhibits HT1080 tumor cell invasion.

Authors:  Li-Hua Li; In Kyu Baek; Jin Hee Kim; Kyung Ho Kang; Yang Seok Koh; Young Do Jung; Chol Kyoon Cho; Seok-Yong Choi; Boo Ahn Shin
Journal:  Oncol Rep       Date:  2009-02       Impact factor: 3.906

4.  SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data.

Authors:  Murray P Cox; Daniel A Peterson; Patrick J Biggs
Journal:  BMC Bioinformatics       Date:  2010-09-27       Impact factor: 3.169

5.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

6.  OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes.

Authors:  Stephan Greiner; Pascal Lehwark; Ralph Bock
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

  6 in total
  1 in total

1.  Phylogenetic Analysis of Elaeagnus L. in China: A Basis for Genetic Improvement of a Berry Crop.

Authors:  Chunsong Cheng; Siqing Fan; Canjian Wang; Linlin Ye; Zupeng Wang; Hongwen Huang
Journal:  Front Plant Sci       Date:  2022-06-09       Impact factor: 6.627

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.