Literature DB >> 33457824

The complete chloroplast genome sequence of Illigera celebica.

Yaxuan Xin1,2, Jing Xin1,2, Guoqiong Yao1,2, Yaya Qu1,2, Fayu Feng1,2, Yu Song3, Zhenghai Sun1,2.   

Abstract

Illigera celebica is an evergreen woody vine that belongs to genus Illigera Bl in the family Hernandiaceae and has medicinal value. The complete chloroplast genome of I. celebica was sequenced to determine its phylogenetic location with respect to the other species under the Laurales. Its whole chloroplast genome is 156,123 bp in length, and comprises a large single-copy region (LSC, 84,913 bp), a small single-copy region (SSC,18,775 bp), and a pair of inverted repeats (IRs, 26,217 bp). The overall GC content is 39.2% (LSC, 37.8%; SSC, 33.9%; IR, 43.4%). Maximum likelihood phylogenetic analysise (TVM + F + R2 model) was conducted using 15 complete chloroplast genomes of Laurales, and the results confirmed that Hernandia nymphaeifolia and Wilkiea huegeliana were located in the same lineage.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Illigera; genome; phylogenetic relationship

Year:  2020        PMID: 33457824      PMCID: PMC7782879          DOI: 10.1080/23802359.2020.1778562

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  2 in total

1.  Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs.

Authors:  Jun-Bo Yang; De-Zhu Li; Hong-Tao Li
Journal:  Mol Ecol Resour       Date:  2014-04-07       Impact factor: 7.090

2.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

  2 in total
  1 in total

1.  The complete plastome sequence of Illigera grandiflora.

Authors:  Yaya Qu; Linyi Yang; Zhenghai Sun; Luyao Ma; Jing Xin; Yu Song; Peiyao Xin
Journal:  Mitochondrial DNA B Resour       Date:  2021-07-15       Impact factor: 0.658

  1 in total

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