Literature DB >> 33457822

Characterization and phylogenetic analysis of the complete mitochondrial genome of a basidiomycetous yeast Cystobasidium sp. (Cystobasidiales: Cystobasidiaceae).

Qiaofeng Liu1, Xin Wang2.   

Abstract

In the present study, the complete mitochondrial genome of a basidiomycetous yeast Cystobasidium sp. was assembled and obtained. The mitochondrial genome of Cystobasidium sp. contains 16 protein-coding genes, 2 ribosomal RNA genes (rRNA), and 24 transfer RNA (tRNA) genes. The complete mitogenome of Cystobasidium sp. has a total length of 24,914 bp, with the base composition as follows: A (30.82), T (32.88%), C (18.37%) and G (17.93%). The Cystobasidium sp. mitogenome exhibited a close relationship with the mitogenome of Microbotryum cf. violaceum, M. lychnidis-dioicae, and Rhodotorula mucilaginosa.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Cystobasidium; basidiomycetous yeast; mitochondrial genome; phylogenetic analysis

Year:  2020        PMID： 33457822      PMCID： PMC7783051          DOI： 10.1080/23802359.2020.1777910

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  14 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Characterization of the mitochondrial genomes of three species in the ectomycorrhizal genus Cantharellus and phylogeny of Agaricomycetes.

Authors:  Qiang Li; Min Liao; Mei Yang; Chuan Xiong; Xin Jin; Zuqin Chen; Wenli Huang
Journal:  Int J Biol Macromol       Date:  2018-06-27       Impact factor: 6.953

3.  Comparative mitogenomics reveals large-scale gene rearrangements in the mitochondrial genome of two Pleurotus species.

Authors:  Qiang Li; Cheng Chen; Chuan Xiong; Xin Jin; Zuqin Chen; Wenli Huang
Journal:  Appl Microbiol Biotechnol       Date:  2018-05-24       Impact factor: 4.813

4.  Characterization and comparison of the mitochondrial genomes from two Lyophyllum fungal species and insights into phylogeny of Agaricomycetes.

Authors:  Qiang Li; Qiangfeng Wang; Xin Jin; Zuqin Chen; Chuan Xiong; Ping Li; Jian Zhao; Wenli Huang
Journal:  Int J Biol Macromol       Date:  2018-10-11       Impact factor: 6.953

5.  The complete mitochondrial genomes of two model ectomycorrhizal fungi (Laccaria): features, intron dynamics and phylogenetic implications.

Authors:  Qiang Li; Luxi Yang; Dabing Xiang; Yan Wan; Qi Wu; Wenli Huang; Gang Zhao
Journal:  Int J Biol Macromol       Date:  2019-10-25       Impact factor: 6.953

6.  Characterization and comparative mitogenomic analysis of six newly sequenced mitochondrial genomes from ectomycorrhizal fungi (Russula) and phylogenetic analysis of the Agaricomycetes.

Authors:  Qiang Li; Qiangfeng Wang; Cheng Chen; Xin Jin; Zuqin Chen; Chuan Xiong; Ping Li; Jian Zhao; Wenli Huang
Journal:  Int J Biol Macromol       Date:  2018-08-01       Impact factor: 6.953

7.  Characterization and comparative analysis of six complete mitochondrial genomes from ectomycorrhizal fungi of the Lactarius genus and phylogenetic analysis of the Agaricomycetes.

Authors:  Qiang Li; Qiangfeng Wang; Xin Jin; Zuqin Chen; Chuan Xiong; Ping Li; Qiaofeng Liu; Wenli Huang
Journal:  Int J Biol Macromol       Date:  2018-10-09       Impact factor: 6.953

8.  Cystobasidium alpinum sp. nov. and Rhodosporidiobolus oreadorum sp. nov. from European Cold Environments and Arctic Region.

Authors:  Benedetta Turchetti; Laura Selbmann; Nina Gunde-Cimerman; Pietro Buzzini; José Paulo Sampaio; Polona Zalar
Journal:  Life (Basel)       Date:  2018-05-05

9.  Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.

Authors:  Christoph Hahn; Lutz Bachmann; Bastien Chevreux
Journal:  Nucleic Acids Res       Date:  2013-05-09       Impact factor: 16.971

10.  Whole genome sequencing of Rhodotorula mucilaginosa isolated from the chewing stick (Distemonanthus benthamianus): insights into Rhodotorula phylogeny, mitogenome dynamics and carotenoid biosynthesis.

Authors:  Han Ming Gan; Bolaji N Thomas; Nicole T Cavanaugh; Grace H Morales; Ashley N Mayers; Michael A Savka; André O Hudson
Journal:  PeerJ       Date:  2017-11-14       Impact factor: 2.984
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  1 in total

1.  The complete mitochondrial genome sequence of the Metschnikowia bicuspidata (Metschnikoff, 1884), an emerging pathogen of 'milky disease' in Chinese mitten crab.

Authors:  Jiannan Liu; Jieying Yu; Senting Pu; Xinran Shi; Yihao Li; Xiaoran Zhao; Shigen Ye
Journal:  Mitochondrial DNA B Resour       Date:  2022-07-12       Impact factor: 0.610
  1 in total

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