Literature DB >> 33457814

The complete chloroplast genome sequence of the Canna edulis Ker Gawl. (Cannaceae).

Qianglong Zhu1, Lijuan Cai2, Huiying Li1, Yu Zhang1, Wenzhen Su1, Qinghong Zhou1.   

Abstract

Canna edulis Ker Gawl. is an essential traditional tuber crop used for fresh consumption and to isolate starch in some tropical and semitropical regions. The complete chloroplast genome sequence of C. edulis has been determined in this study. The total genome size is 164,650 bp in length and contains a pair of inverted repeats (IRs) of 27,278 bp, which were separated by large single-copy (LSC) and small single-copy (SSC) of 91,421 bp and 18,673 bp, respectively. A total of 131 genes were predicted including 86 protein-coding genes, 8 rRNA genes and 37 tRNA genes. Further, maximum-likelihood phylogenetic analysis revealed that C. edulis belongs to Cannaceae in Zingiberales. The chloroplast genome of C. edulis is first complete genome sequence in Cannaceae and would play a significant role in the development of molecular markers in plant phylogenetic and population genetic studies.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Canna edulis Ker Gawl; chloroplast genome; edible canna

Year:  2020        PMID: 33457814      PMCID: PMC7782134          DOI: 10.1080/23802359.2020.1775512

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  7 in total

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Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Chemical composition, mineral profile, and functional properties of Canna (Canna edulis) and Arrowroot (Maranta spp.) starches.

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Journal:  Plant Foods Hum Nutr       Date:  2005-09       Impact factor: 3.921

3.  Complete Chloroplast Genome Sequence of Corroborates Structural Heterogeneity of Inverted Repeats in Wild Progenitors of Cultivated Bananas and Plantains.

Authors:  Santoshkumar M Shetty; Maria Ulfa Md Shah; Kavyashree Makale; Yusmin Mohd-Yusuf; Norzulaani Khalid; Rofina Yasmin Othman
Journal:  Plant Genome       Date:  2016-07       Impact factor: 4.089

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Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

5.  Parallelization of MAFFT for large-scale multiple sequence alignments.

Authors:  Tsukasa Nakamura; Kazunori D Yamada; Kentaro Tomii; Kazutaka Katoh
Journal:  Bioinformatics       Date:  2018-07-15       Impact factor: 6.937

6.  CPGAVAS2, an integrated plastome sequence annotator and analyzer.

Authors:  Linchun Shi; Haimei Chen; Mei Jiang; Liqiang Wang; Xi Wu; Linfang Huang; Chang Liu
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

Review 7.  Authentication of medicinal plants by DNA markers.

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Journal:  Plant Gene       Date:  2015-10-22
  7 in total
  2 in total

Review 1.  Pangenomes as a Resource to Accelerate Breeding of Under-Utilised Crop Species.

Authors:  Cassandria Geraldine Tay Fernandez; Benjamin John Nestor; Monica Furaste Danilevicz; Mitchell Gill; Jakob Petereit; Philipp Emanuel Bayer; Patrick Michael Finnegan; Jacqueline Batley; David Edwards
Journal:  Int J Mol Sci       Date:  2022-02-28       Impact factor: 5.923

2.  High-quality reference genome sequences of two Cannaceae species provide insights into the evolution of Cannaceae.

Authors:  Yuhua Fu; Sirong Jiang; Meiling Zou; Jianjia Xiao; Long Yang; Chunfang Luo; Ping Rao; Wenquan Wang; Zhengui Ou; Fanzhi Liu; Zhiqiang Xia
Journal:  Front Plant Sci       Date:  2022-07-28       Impact factor: 6.627

  2 in total

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