Literature DB >> 33457811

The complete mitochondrial genome of the Antarctic marbled rockcod, Notothenia rossii (Perciformes, Nototheniidae).

Euna Jo1,2, Yll Hwan Cho1, Seung Jae Lee1, Eunkyung Choi1, Jeong-Hoon Kim3, Young Min Chi1, Jin-Hyoung Kim2, Hyun Park1.   

Abstract

The complete mitochondrial genome of Notothenia rossii was obtained using PacBio Sequel long-read sequencing platform. The mitogenome of N. rossii was circular form and 18,274 bp long, which consists of 13 protein-coding genes, 24 tRNAs, 2 rRNAs, and non-coding control region. Particularly, we found duplicated tRNAThr and tRNAPro in addition to the typical 22 tRNAs. The phylogenetic tree revealed that N. rossii was most closely related to N. coriiceps among species in the Nototheniidae clade within the suborder Notothenioidei.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Antarctica; Notothenia rossii; Notothenioidei; PacBio; mitochondrial genome

Year:  2020        PMID： 33457811      PMCID： PMC7782215          DOI： 10.1080/23802359.2020.1775507

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  6 in total

1.  The rapid generation of mutation data matrices from protein sequences.

Authors:  D T Jones; W R Taylor; J M Thornton
Journal:  Comput Appl Biosci       Date:  1992-06

2.  Complete mitochondrial genome of the Antarctic bullhead notothen, Notothenia coriiceps (Perciformes, Nototheniidae).

Authors:  Jae Soon Oh; Do Hwan Ahn; Jongkyu Lee; Jungeun Choi; Young Min Chi; Hyun Park
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-08-14       Impact factor: 1.514

3.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

4.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

5.  The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment.

Authors:  Seung Chul Shin; Do Hwan Ahn; Su Jin Kim; Chul Woo Pyo; Hyoungseok Lee; Mi-Kyeong Kim; Jungeun Lee; Jong Eun Lee; H William Detrich; John H Postlethwait; David Edwards; Sung Gu Lee; Jun Hyuck Lee; Hyun Park
Journal:  Genome Biol       Date:  2014-09-25       Impact factor: 13.583

6.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.

Authors:  Sergey Koren; Brian P Walenz; Konstantin Berlin; Jason R Miller; Nicholas H Bergman; Adam M Phillippy
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043
  6 in total

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