Literature DB >> 33457736

The complete chloroplast genome of Epimedium enshiense B. L. Guo et Hsiao (Berberidaceae).

Xiaoming Li1,2, Tianrong Xu2,3, Yu Yao2, Qianru Yang2, Chaoqun Xu2, Fengmei Suo2, Cheng Zhang2, Guoan Shen2, Baolin Guo2, Xiang Liu4, Shenghua Wei1.   

Abstract

The genus of Epimedium belongs to Berberidaceae family, which is famous for their medicinal and ornamental value. In recent years, Epimedium has attracted increasing attention due to their medicinal and nutritive value. In this research, we reported the complete chloroplast (cp) genome of Epimedium enshiense. The complete chloroplast of this species is 157,076 bp in length, including a pair of invert repeat regions (IRS) (25,833 bp) that is divided by a large single copy area (LSC) (88,340 bp) and a small single copy area (SSC) (17,070 bp). The circular chloroplast genome of E. enshiense contains 112 unique genes, composing of 78 protein-coding genes, 30 tRNA, and four rRNA genes. Phylogenetic analysis indicates that E. enshiense has a closer relationship with E. dolichostmon.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Berberidaceae; Chloroplast genome; Epimedium enshiense

Year:  2020        PMID: 33457736      PMCID: PMC7782069          DOI: 10.1080/23802359.2020.1730269

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  4 in total

1.  The effects of Chinese yam-epimedium mixture on respiratory function and quality of life in patients with chronic obstructive pulmonary disease.

Authors:  Ya-ling Zhao; Hong-ru Song; Jin-xiu Fei; Ying Liang; Bing-hua Zhang; Qiu-ping Liu; Juan Wang; Ping Hu
Journal:  J Tradit Chin Med       Date:  2012-06       Impact factor: 0.848

2.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

3.  CPGAVAS2, an integrated plastome sequence annotator and analyzer.

Authors:  Linchun Shi; Haimei Chen; Mei Jiang; Liqiang Wang; Xi Wu; Linfang Huang; Chang Liu
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

4.  MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

Authors:  Kazutaka Katoh; John Rozewicki; Kazunori D Yamada
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622

  4 in total

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