Literature DB >> 33457733

The chloroplast genome of the pincushion cactus Mammilllaria haageana subsp. san-a ngelensis, a Mexican endangered species.

Silvia Hinojosa-Alvarez1, Salvador Arias1, Sylvie Ferrand2, Michael D Purugganan2,3, Julio Rozas4, Ulises Rosas1, Ana Wegier1.   

Abstract

The genus Mammillaria occupies diverse habitats and exhibits diverse growth patterns and a large range of morphologies. Most of the species of this genus are used as ornamental plants and are subject to mass habitat loss. Due to these factors, they are being submitted to selective pressure that might affect conservational efforts and management plans. We obtained the 133 gene chloroplast genome as part of the project of sequencing the complete genome of pincushion cactus, including 88 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. The phylogenetic tree indicates the pincushion cactus is a sister species of M. supertexta and M. huitzilopochtli.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Cactaceae; conservation genetics; phylogenomics; rare species; succulent plants

Year:  2020        PMID: 33457733      PMCID: PMC7782124          DOI: 10.1080/23802359.2020.1757523

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

1.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

2.  GeSeq - versatile and accurate annotation of organelle genomes.

Authors:  Michael Tillich; Pascal Lehwark; Tommaso Pellizzer; Elena S Ulbricht-Jones; Axel Fischer; Ralph Bock; Stephan Greiner
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

3.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

4.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

5.  MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.

Authors:  Kazutaka Katoh; John Rozewicki; Kazunori D Yamada
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622

6.  De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats in Mammillaria (Cactaceae, Caryophyllales).

Authors:  Sofía Solórzano; Delil A Chincoya; Alejandro Sanchez-Flores; Karel Estrada; Clara E Díaz-Velásquez; Antonio González-Rodríguez; Felipe Vaca-Paniagua; Patricia Dávila; Salvador Arias
Journal:  Plants (Basel)       Date:  2019-10-01
  6 in total
  1 in total

1.  Evaluating the monophyly of Mammillaria series Supertextae (Cactaceae).

Authors:  Cristian R Cervantes; Silvia Hinojosa-Alvarez; Ana Wegier; Ulises Rosas; Salvador Arias
Journal:  PhytoKeys       Date:  2021-04-28       Impact factor: 1.635

  1 in total

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