Literature DB >> 33457730

Characterization of the complete chloroplast genome of Allium mongolicum.

Hongxia Wang1, Fahui Ye2, Xiang Li2, Lirong Wang1, Jiuli Wang1, Wenjie Chen2.   

Abstract

Allium mongolicum is a kind of wild vegetable with high nutritional value and even a traditional Chinese medicine. Here, we reported the complete chloroplast genome sequence of Allium mongolicum. The size of the chloroplast genome is 153,376 bp in length, including a large single copy region (LSC) of 82,912 bp, a small single copy region (SSC) of 18,054 bp, and a pair of inverted repeated regions of 26,205 bp. The Allium mongolicum chloroplast genome encodes 115 genes, including 69 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Phylogenetic tree showed that Allium mongolicum is closely related to Allium przewalskianum.
© 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Allium mongolicum; chloroplast genome; phylogenetic tree

Year:  2020        PMID: 33457730      PMCID: PMC7781861          DOI: 10.1080/23802359.2020.1756951

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN: 2380-2359            Impact factor:   0.658


  6 in total

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Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

2.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

3.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

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Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

4.  Plann: A command-line application for annotating plastome sequences.

Authors:  Daisie I Huang; Quentin C B Cronk
Journal:  Appl Plant Sci       Date:  2015-08-10       Impact factor: 1.936

5.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

6.  Effects of flavonoids from Allium mongolicum Regel on growth performance and growth-related hormones in meat sheep.

Authors:  Sarula Qi; Terigele Wang; Renwei Chen; Cuifang Wang; Changjin Ao
Journal:  Anim Nutr       Date:  2017-01-17
  6 in total

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