Literature DB >> 33456983

Drosophila Zinc Finger Protein CG9890 Is Colocalized with Chromatin Modifying and Remodeling Complexes on Gene Promoters and Involved in Transcription Regulation.

N A Fursova1, M Y Mazina1, J V Nikolenko1, N E Vorobyova1, A N Krasnov1.   

Abstract

In this work, we conducted a genome-wide study of the zinc finger protein CG9890 and showed that it is localized mostly on the promoters of active genes. The CG9890 binding sites are low-nucleosome-density regions and are colocalized with the chromatin modifying and remodeling complexes SAGA and dSWI/SNF, as well as with the ORC replication complex. The CG9890 protein was shown to be involved in the regulation of the expression of some genes on the promoters of which it is located, with the ecdysone cascade genes accounting for a significant percentage of these genes. Thus, the CG9890 protein is a new member of the transcriptional network which is localized on active promoters, interacts with the main transcription and replication complexes, and is involved in the regulation of both basal and inducible transcription. Copyright ® 2020 National Research University Higher School of Economics.

Entities:  

Keywords:  CG9890; ChIP-Seq; Drosophila; ENY2; zinc fingers

Year:  2020        PMID: 33456983      PMCID: PMC7800599          DOI: 10.32607/actanaturae.11056

Source DB:  PubMed          Journal:  Acta Naturae        ISSN: 2075-8251            Impact factor:   1.845


  19 in total

1.  Chromatin signatures of the Drosophila replication program.

Authors:  Matthew L Eaton; Joseph A Prinz; Heather K MacAlpine; George Tretyakov; Peter V Kharchenko; David M MacAlpine
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

2.  Brahma links the SWI/SNF chromatin-remodeling complex with MeCP2-dependent transcriptional silencing.

Authors:  K N Harikrishnan; Maggie Z Chow; Emma K Baker; Sharmistha Pal; Sahar Bassal; Daniella Brasacchio; Li Wang; Jeff M Craig; Peter L Jones; Saïd Sif; Assam El-Osta
Journal:  Nat Genet       Date:  2005-02-06       Impact factor: 38.330

3.  ENY2: couple, triple...more?

Authors:  Daria V Kopytova; Alexey N Krasnov; Anastasija V Orlova; Dmitriy Ya Gurskiy; Elena N Nabirochkina; Sofa G Georgieva; Yulii V Shidlovskii
Journal:  Cell Cycle       Date:  2010-02-01       Impact factor: 4.534

4.  Early-late genes of the ecdysone cascade as models for transcriptional studies.

Authors:  Marina Yu Mazina; Julia V Nikolenko; Nadezda A Fursova; Petr N Nedil'ko; Aleksey N Krasnov; Nadezhda E Vorobyeva
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

5.  A retrocopy of a gene can functionally displace the source gene in evolution.

Authors:  Aleksey N Krasnov; Maria M Kurshakova; Vasily E Ramensky; Pavel V Mardanov; Elena N Nabirochkina; Sofia G Georgieva
Journal:  Nucleic Acids Res       Date:  2005-11-27       Impact factor: 16.971

6.  Zinc Finger Protein CG9890 - New Component of ENY2-Containing Complexes of Drosophila.

Authors:  N A Fursova; J V Nikolenko; N V Soshnikova; M Y Mazina; N E Vorobyova; A N Krasnov
Journal:  Acta Naturae       Date:  2018 Oct-Dec       Impact factor: 1.845

7.  The DUBm subunit Sgf11 is required for mRNA export and interacts with Cbp80 in Drosophila.

Authors:  Dmitriy Gurskiy; Anastasija Orlova; Nadezhda Vorobyeva; Elena Nabirochkina; Alexey Krasnov; Yulii Shidlovskii; Sofia Georgieva; Daria Kopytova
Journal:  Nucleic Acids Res       Date:  2012-09-18       Impact factor: 16.971

8.  Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Authors:  Peter V Kharchenko; Michael Y Tolstorukov; Peter J Park
Journal:  Nat Biotechnol       Date:  2008-11-16       Impact factor: 54.908

9.  Drosophila Brahma complex remodels nucleosome organizations in multiple aspects.

Authors:  Jiejun Shi; Meizhu Zheng; Youqiong Ye; Min Li; Xiaolong Chen; Xinjie Hu; Jin Sun; Xiaobai Zhang; Cizhong Jiang
Journal:  Nucleic Acids Res       Date:  2014-07-31       Impact factor: 16.971

10.  SAGA Is a General Cofactor for RNA Polymerase II Transcription.

Authors:  Tiago Baptista; Sebastian Grünberg; Nadège Minoungou; Maria J E Koster; H T Marc Timmers; Steve Hahn; Didier Devys; László Tora
Journal:  Mol Cell       Date:  2017-09-14       Impact factor: 17.970

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