Literature DB >> 33452349

Coupling machine learning and crop modeling improves crop yield prediction in the US Corn Belt.

Mohsen Shahhosseini1, Guiping Hu2, Isaiah Huber3, Sotirios V Archontoulis3.   

Abstract

This study investigates whether coupling crop modeling and machine learning (ML) improves corn yield predictions in the US Corn Belt. The main objectives are to explore whether a hybrid approach (crop modeling + ML) would result in better predictions, investigate which combinations of hybrid models provide the most accurate predictions, and determine the features from the crop modeling that are most effective to be integrated with ML for corn yield prediction. Five ML models (linear regression, LASSO, LightGBM, random forest, and XGBoost) and six ensemble models have been designed to address the research question. The results suggest that adding simulation crop model variables (APSIM) as input features to ML models can decrease yield prediction root mean squared error (RMSE) from 7 to 20%. Furthermore, we investigated partial inclusion of APSIM features in the ML prediction models and we found soil moisture related APSIM variables are most influential on the ML predictions followed by crop-related and phenology-related variables. Finally, based on feature importance measure, it has been observed that simulated APSIM average drought stress and average water table depth during the growing season are the most important APSIM inputs to ML. This result indicates that weather information alone is not sufficient and ML models need more hydrological inputs to make improved yield predictions.

Entities:  

Year:  2021        PMID: 33452349      PMCID: PMC7810832          DOI: 10.1038/s41598-020-80820-1

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  16 in total

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3.  Multi-trait Genomic Selection Methods for Crop Improvement.

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4.  Within-season yield prediction with different nitrogen inputs under rain-fed condition using CERES-Wheat model in the northwest of China.

Authors:  Zhengpeng Li; Mingdan Song; Hao Feng; Ying Zhao
Journal:  J Sci Food Agric       Date:  2015-10-26       Impact factor: 3.638

5.  A deep learning approach to conflating heterogeneous geospatial data for corn yield estimation: A case study of the US Corn Belt at the county level.

Authors:  Hao Jiang; Hao Hu; Renhai Zhong; Jinfan Xu; Jialu Xu; Jingfeng Huang; Shaowen Wang; Yibin Ying; Tao Lin
Journal:  Glob Chang Biol       Date:  2019-12-02       Impact factor: 10.863

6.  Bias in random forest variable importance measures: illustrations, sources and a solution.

Authors:  Carolin Strobl; Anne-Laure Boulesteix; Achim Zeileis; Torsten Hothorn
Journal:  BMC Bioinformatics       Date:  2007-01-25       Impact factor: 3.169

7.  Optimizing Selection and Mating in Genomic Selection with a Look-Ahead Approach: An Operations Research Framework.

Authors:  Saba Moeinizade; Guiping Hu; Lizhi Wang; Patrick S Schnable
Journal:  G3 (Bethesda)       Date:  2019-07-09       Impact factor: 3.154

8.  A CNN-RNN Framework for Crop Yield Prediction.

Authors:  Saeed Khaki; Lizhi Wang; Sotirios V Archontoulis
Journal:  Front Plant Sci       Date:  2020-01-24       Impact factor: 5.753

9.  Modeling Flood-Induced Stress in Soybeans.

Authors:  Heather R Pasley; Isaiah Huber; Michael J Castellano; Sotirios V Archontoulis
Journal:  Front Plant Sci       Date:  2020-02-12       Impact factor: 5.753

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  7 in total

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Authors:  Jacob D Washburn; Emre Cimen; Guillaume Ramstein; Timothy Reeves; Patrick O'Briant; Greg McLean; Mark Cooper; Graeme Hammer; Edward S Buckler
Journal:  Theor Appl Genet       Date:  2021-08-27       Impact factor: 5.699

2.  Climate Change and Management Impacts on Soybean N Fixation, Soil N Mineralization, N2O Emissions, and Seed Yield.

Authors:  Elvis F Elli; Ignacio A Ciampitti; Michael J Castellano; Larry C Purcell; Seth Naeve; Patricio Grassini; Nicolas C La Menza; Luiz Moro Rosso; André F de Borja Reis; Péter Kovács; Sotirios V Archontoulis
Journal:  Front Plant Sci       Date:  2022-04-27       Impact factor: 6.627

3.  Incorporation of machine learning and deep neural network approaches into a remote sensing-integrated crop model for the simulation of rice growth.

Authors:  Seungtaek Jeong; Jonghan Ko; Taehwan Shin; Jong-Min Yeom
Journal:  Sci Rep       Date:  2022-05-30       Impact factor: 4.996

4.  Selection of nitrogen responsive root architectural traits in spinach using machine learning and genetic correlations.

Authors:  Henry O Awika; Amit K Mishra; Haramrit Gill; James DiPiazza; Carlos A Avila; Vijay Joshi
Journal:  Sci Rep       Date:  2021-05-05       Impact factor: 4.379

5.  Machine Learning Prediction of Nitrification From Ammonia- and Nitrite-Oxidizer Community Structure.

Authors:  Conard Lee; Fatemeh Amini; Guiping Hu; Larry J Halverson
Journal:  Front Microbiol       Date:  2022-07-11       Impact factor: 6.064

6.  Assessment of plant growth promoting bacteria strains on growth, yield and quality of sweet corn.

Authors:  Nikolaos Katsenios; Varvara Andreou; Panagiotis Sparangis; Nikola Djordjevic; Marianna Giannoglou; Sofia Chanioti; Christoforos-Nikitas Kasimatis; Ioanna Kakabouki; Dimitriοs Leonidakis; Nicholaos Danalatos; George Katsaros; Aspasia Efthimiadou
Journal:  Sci Rep       Date:  2022-07-08       Impact factor: 4.996

7.  A time-dependent parameter estimation framework for crop modeling.

Authors:  Faezeh Akhavizadegan; Javad Ansarifar; Lizhi Wang; Isaiah Huber; Sotirios V Archontoulis
Journal:  Sci Rep       Date:  2021-06-01       Impact factor: 4.379

  7 in total

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