Literature DB >> 33452238

Irreversibility in dynamical phases and transitions.

Daniel S Seara1,2, Benjamin B Machta3,4, Michael P Murrell5,6,7.   

Abstract

Living and non-living active matter consumes energy at the microscopic scale to drive emergent, macroscopic behavior including traveling waves and coherent oscillations. Recent work has characterized non-equilibrium systems by their total energy dissipation, but little has been said about how dissipation manifests in distinct spatiotemporal patterns. We introduce a measure of irreversibility we term the entropy production factor to quantify how time reversal symmetry is broken in field theories across scales. We use this scalar, dimensionless function to characterize a dynamical phase transition in simulations of the Brusselator, a prototypical biochemically motivated non-linear oscillator. We measure the total energetic cost of establishing synchronized biochemical oscillations while simultaneously quantifying the distribution of irreversibility across spatiotemporal frequencies.

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Year:  2021        PMID: 33452238      PMCID: PMC7810704          DOI: 10.1038/s41467-020-20281-2

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  34 in total

1.  Three detailed fluctuation theorems.

Authors:  Massimiliano Esposito; Christian Van den Broeck
Journal:  Phys Rev Lett       Date:  2010-03-01       Impact factor: 9.161

2.  Decision Making in the Arrow of Time.

Authors:  Édgar Roldán; Izaak Neri; Meik Dörpinghaus; Heinrich Meyr; Frank Jülicher
Journal:  Phys Rev Lett       Date:  2015-12-16       Impact factor: 9.161

3.  Time-symmetric fluctuations in nonequilibrium systems.

Authors:  Christian Maes; Maarten H van Wieren
Journal:  Phys Rev Lett       Date:  2006-06-20       Impact factor: 9.161

Review 4.  Stochastic thermodynamics, fluctuation theorems and molecular machines.

Authors:  Udo Seifert
Journal:  Rep Prog Phys       Date:  2012-11-20

5.  Entropy Production of Nanosystems with Time Scale Separation.

Authors:  Shou-Wen Wang; Kyogo Kawaguchi; Shin-Ichi Sasa; Lei-Han Tang
Journal:  Phys Rev Lett       Date:  2016-08-10       Impact factor: 9.161

6.  Proof of the finite-time thermodynamic uncertainty relation for steady-state currents.

Authors:  Jordan M Horowitz; Todd R Gingrich
Journal:  Phys Rev E       Date:  2017-08-25       Impact factor: 2.529

7.  Entropy production as a tool for characterizing nonequilibrium phase transitions.

Authors:  C E Fernández Noa; Pedro E Harunari; M J de Oliveira; C E Fiore
Journal:  Phys Rev E       Date:  2019-07       Impact factor: 2.529

8.  Entropy production rate is maximized in non-contractile actomyosin.

Authors:  Daniel S Seara; Vikrant Yadav; Ian Linsmeier; A Pasha Tabatabai; Patrick W Oakes; S M Ali Tabei; Shiladitya Banerjee; Michael P Murrell
Journal:  Nat Commun       Date:  2018-11-23       Impact factor: 14.919

9.  Inferring broken detailed balance in the absence of observable currents.

Authors:  Ignacio A Martínez; Gili Bisker; Jordan M Horowitz; Juan M R Parrondo
Journal:  Nat Commun       Date:  2019-08-06       Impact factor: 14.919

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  1 in total

Review 1.  Stochastic Hydrodynamics of Complex Fluids: Discretisation and Entropy Production.

Authors:  Michael E Cates; Étienne Fodor; Tomer Markovich; Cesare Nardini; Elsen Tjhung
Journal:  Entropy (Basel)       Date:  2022-02-09       Impact factor: 2.524

  1 in total

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