Literature DB >> 33450961

Noncoding RNA: An Insight into Chloroplast and Mitochondrial Gene Expressions.

Asha Anand1, Gopal Pandi1.   

Abstract

Regulation of gene expression in any biological system is a complex process with many checkpoints at the transcriptional, post-transcriptional and translational levels. The control mechanism is mediated by various protein factors, secondary metabolites and a newly included regulatory member, i.e., noncoding RNAs (ncRNAs). It is known that ncRNAs modulate the mRNA or protein profiles of the cell depending on the degree of complementary and context of the microenvironment. In plants, ncRNAs are essential for growth and development in normal conditions by controlling various gene expressions and have emerged as a key player to guard plants during adverse conditions. In order to have smooth functioning of the plants under any environmental pressure, two very important DNA-harboring semi-autonomous organelles, namely, chloroplasts and mitochondria, are considered as main players. These organelles conduct the most crucial metabolic pathways that are required to maintain cell homeostasis. Thus, it is imperative to explore and envisage the molecular machineries responsible for gene regulation within the organelles and their coordination with nuclear transcripts. Therefore, the present review mainly focuses on ncRNAs origination and their gene regulation in chloroplasts and plant mitochondria.

Entities:  

Keywords:  chloroplast; gene regulation; lncRNAs; mitochondria; ncRNAs; sRNAs

Year:  2021        PMID: 33450961      PMCID: PMC7828403          DOI: 10.3390/life11010049

Source DB:  PubMed          Journal:  Life (Basel)        ISSN: 2075-1729


  130 in total

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Authors:  Thomas Pfannschmidt; Chunhong Yang
Journal:  Protoplasma       Date:  2012-03-23       Impact factor: 3.356

Review 2.  MicroRNAs and Their Regulatory Roles in Plant-Environment Interactions.

Authors:  Xianwei Song; Yan Li; Xiaofeng Cao; Yijun Qi
Journal:  Annu Rev Plant Biol       Date:  2019-03-08       Impact factor: 26.379

3.  The E domain of CRR2 participates in sequence-specific recognition of RNA in plastids.

Authors:  Hannes Ruwe; Bernard Gutmann; Christian Schmitz-Linneweber; Ian Small; Peter Kindgren
Journal:  New Phytol       Date:  2018-12-06       Impact factor: 10.151

4.  A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice.

Authors:  Junjie Tan; Zhenhua Tan; Fuqing Wu; Peike Sheng; Yueqin Heng; Xinhua Wang; Yulong Ren; Jiulin Wang; Xiuping Guo; Xin Zhang; Zhijun Cheng; Ling Jiang; Xuanming Liu; Haiyang Wang; Jianmin Wan
Journal:  Mol Plant       Date:  2014-05-12       Impact factor: 13.164

Review 5.  Circular RNA: an emerging key player in RNA world.

Authors:  Xianwen Meng; Xue Li; Peijing Zhang; Jingjing Wang; Yincong Zhou; Ming Chen
Journal:  Brief Bioinform       Date:  2017-07-01       Impact factor: 11.622

6.  The tRNA-like structure of Turnip yellow mosaic virus RNA is a 3'-translational enhancer.

Authors:  Daiki Matsuda; Theo W Dreher
Journal:  Virology       Date:  2004-03-30       Impact factor: 3.616

7.  Characterization of plastid psbT sense and antisense RNAs.

Authors:  Ouafa Zghidi-Abouzid; Livia Merendino; Frank Buhr; Mustafa Malik Ghulam; Silva Lerbs-Mache
Journal:  Nucleic Acids Res       Date:  2011-03-17       Impact factor: 16.971

8.  Identification of small non-coding RNAs from mitochondria and chloroplasts.

Authors:  Birgit Lung; Anja Zemann; Monika J Madej; Markus Schuelke; Sandra Techritz; Stephanie Ruf; Ralph Bock; Alexander Hüttenhofer
Journal:  Nucleic Acids Res       Date:  2006-08-09       Impact factor: 16.971

9.  High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora.

Authors:  Zhiqiang Wu; James D Stone; Helena Štorchová; Daniel B Sloan
Journal:  BMC Genomics       Date:  2015-11-14       Impact factor: 3.969

10.  Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies.

Authors:  Sang-Yoon Shin; Jin Seo Jeong; Jae Yun Lim; Taewook Kim; June Hyun Park; Ju-Kon Kim; Chanseok Shin
Journal:  BMC Genomics       Date:  2018-07-13       Impact factor: 3.969

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  4 in total

1.  The elusive roles of chloroplast microRNAs: an unexplored facet of the plant transcriptome.

Authors:  Luis Alberto Bravo-Vázquez; Aashish Srivastava; Anindya Bandyopadhyay; Sujay Paul
Journal:  Plant Mol Biol       Date:  2022-05-25       Impact factor: 4.335

2.  Non-transgenic Gene Modulation via Spray Delivery of Nucleic Acid/Peptide Complexes into Plant Nuclei and Chloroplasts.

Authors:  Chonprakun Thagun; Yoko Horii; Maai Mori; Seiya Fujita; Misato Ohtani; Kousuke Tsuchiya; Yutaka Kodama; Masaki Odahara; Keiji Numata
Journal:  ACS Nano       Date:  2022-02-23       Impact factor: 15.881

3.  Research Advances in Plant Genomics.

Authors:  Jitendra Kumar; Krishan Mohan Rai
Journal:  Life (Basel)       Date:  2021-11-28

Review 4.  The Nucleus/Mitochondria-Shuttling LncRNAs Function as New Epigenetic Regulators of Mitophagy in Cancer.

Authors:  Yan Li; Wei Li; Andrew R Hoffman; Jiuwei Cui; Ji-Fan Hu
Journal:  Front Cell Dev Biol       Date:  2021-09-08
  4 in total

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