Literature DB >> 33449146

Revealing the hidden reality of the mammalian 12-h ultradian rhythms.

Heather Ballance1, Bokai Zhu2,3,4.   

Abstract

Biological oscillations often cycle at different harmonics of the 24-h circadian rhythms, a phenomenon we coined "Musica Universalis" in 2017. Like the circadian rhythm, the 12-h oscillation is also evolutionarily conserved, robust, and has recently gained new traction in the field of chronobiology. Originally thought to be regulated by the circadian clock and/or environmental cues, recent new evidences support the notion that the majority of 12-h rhythms are regulated by a distinct and cell-autonomous pacemaker that includes the unfolded protein response (UPR) transcription factor spliced form of XBP1 (XBP1s). 12-h cycle of XBP1s level in turn transcriptionally generates robust 12-h rhythms of gene expression enriched in the central dogma information flow (CEDIF) pathway. Given the regulatory and functional separation of the 12-h and circadian clocks, in this review, we will focus our attention on the mammalian 12-h pacemaker, and discuss our current understanding of its prevalence, evolutionary origin, regulation, and functional roles in both physiological and pathological processes.

Entities:  

Keywords:  12-h clock; Circadian rhythm; ER stress; Ultradian rhythm; Unfolded protein response; XBP1s

Mesh:

Year:  2021        PMID: 33449146     DOI: 10.1007/s00018-020-03730-5

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  72 in total

1.  JTK_CYCLE: an efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets.

Authors:  Michael E Hughes; John B Hogenesch; Karl Kornacker
Journal:  J Biol Rhythms       Date:  2010-10       Impact factor: 3.182

2.  A circadian gene expression atlas in mammals: implications for biology and medicine.

Authors:  Ray Zhang; Nicholas F Lahens; Heather I Ballance; Michael E Hughes; John B Hogenesch
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-27       Impact factor: 11.205

3.  Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation.

Authors:  Rendong Yang; Zhen Su
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

4.  Transcriptional architecture and chromatin landscape of the core circadian clock in mammals.

Authors:  Nobuya Koike; Seung-Hee Yoo; Hung-Chung Huang; Vivek Kumar; Choogon Lee; Tae-Kyung Kim; Joseph S Takahashi
Journal:  Science       Date:  2012-08-30       Impact factor: 47.728

5.  Detecting rhythms in time series with RAIN.

Authors:  Paul F Thaben; Pål O Westermark
Journal:  J Biol Rhythms       Date:  2014-10-17       Impact factor: 3.182

Review 6.  Unveiling "Musica Universalis" of the Cell: A Brief History of Biological 12-Hour Rhythms.

Authors:  Bokai Zhu; Clifford C Dacso; Bert W O'Malley
Journal:  J Endocr Soc       Date:  2018-06-06

7.  A novel mathematical method for disclosing oscillations in gene transcription: A comparative study.

Authors:  Athanasios C Antoulas; Bokai Zhu; Qiang Zhang; Brian York; Bert W O'Malley; Clifford C Dacso
Journal:  PLoS One       Date:  2018-09-19       Impact factor: 3.240

8.  12-h clock regulation of genetic information flow by XBP1s.

Authors:  Yinghong Pan; Heather Ballance; Huan Meng; Naomi Gonzalez; Sam-Moon Kim; Leymaan Abdurehman; Brian York; Xi Chen; Yisrael Schnytzer; Oren Levy; Clifford C Dacso; Colleen A McClung; Bert W O'Malley; Silvia Liu; Bokai Zhu
Journal:  PLoS Biol       Date:  2020-01-14       Impact factor: 8.029

Review 9.  Genomics of circadian rhythms in health and disease.

Authors:  Filipa Rijo-Ferreira; Joseph S Takahashi
Journal:  Genome Med       Date:  2019-12-17       Impact factor: 11.117

10.  Harmonics of circadian gene transcription in mammals.

Authors:  Michael E Hughes; Luciano DiTacchio; Kevin R Hayes; Christopher Vollmers; S Pulivarthy; Julie E Baggs; Satchidananda Panda; John B Hogenesch
Journal:  PLoS Genet       Date:  2009-04-03       Impact factor: 5.917

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  3 in total

Review 1.  Logic of the Temporal Compartmentalization of the Hepatic Metabolic Cycle.

Authors:  Bokai Zhu
Journal:  Physiology (Bethesda)       Date:  2022-06-06

2.  Unconscious mind activates central cardiovascular network and promotes adaptation to microgravity possibly anti-aging during 1-year-long spaceflight.

Authors:  Kuniaki Otsuka; Germaine Cornelissen; Satoshi Furukawa; Koichi Shibata; Yutaka Kubo; Koh Mizuno; Tatsuya Aiba; Hiroshi Ohshima; Chiaki Mukai
Journal:  Sci Rep       Date:  2022-07-13       Impact factor: 4.996

3.  Four-dimensional nuclear speckle phase separation dynamics regulate proteostasis.

Authors:  William Dion; Heather Ballance; Jane Lee; Yinghong Pan; Saad Irfan; Casey Edwards; Michelle Sun; Jing Zhang; Xin Zhang; Silvia Liu; Bokai Zhu
Journal:  Sci Adv       Date:  2022-01-05       Impact factor: 14.136

  3 in total

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