Literature DB >> 33446791

Annual phytoplankton dynamics in coastal waters from Fildes Bay, Western Antarctic Peninsula.

Nicole Trefault1, Rodrigo De la Iglesia2, Mario Moreno-Pino3, Adriana Lopes Dos Santos4, Catherine Gérikas Ribeiro3, Génesis Parada-Pozo3, Antonia Cristi3, Dominique Marie5, Daniel Vaulot6,7.   

Abstract

Year-round reports of phytoplankton dynamics in the West Antarctic Peninsula are rare and mainly limited to microscopy and/or pigment-based studies. We analyzed the phytoplankton community from coastal waters of Fildes Bay in the West Antarctic Peninsula between January 2014 and 2015 using metabarcoding of the nuclear and plastidial 18/16S rRNA gene from both size-fractionated and flow cytometry sorted samples. Overall 14 classes of photosynthetic eukaryotes were present in our samples with the following dominating: Bacillariophyta (diatoms), Pelagophyceae and Dictyochophyceae for division Ochrophyta, Mamiellophyceae and Pyramimonadophyceae for division Chlorophyta, Haptophyta and Cryptophyta. Each metabarcoding approach yielded a different image of the phytoplankton community with for example Prymnesiophyceae more prevalent in plastidial metabarcodes and Mamiellophyceae in nuclear ones. Diatoms were dominant in the larger size fractions and during summer, while Prymnesiophyceae and Cryptophyceae were dominant in colder seasons. Pelagophyceae were particularly abundant towards the end of autumn (May). In addition of Micromonas polaris and Micromonas sp. clade B3, both previously reported in Arctic waters, we detected a new Micromonas 18S rRNA sequence signature, close to, but clearly distinct from M. polaris, which potentially represents a new clade specific of the Antarctic. These results highlight the need for complementary strategies as well as the importance of year-round monitoring for a comprehensive description of phytoplankton communities in Antarctic coastal waters.

Entities:  

Year:  2021        PMID: 33446791      PMCID: PMC7809266          DOI: 10.1038/s41598-020-80568-8

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  43 in total

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2.  Whole-genome amplification (WGA) of marine photosynthetic eukaryote populations.

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Journal:  FEMS Microbiol Ecol       Date:  2011-03-16       Impact factor: 4.194

3.  PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy.

Authors:  Johan Decelle; Sarah Romac; Rowena F Stern; El Mahdi Bendif; Adriana Zingone; Stéphane Audic; Michael D Guiry; Laure Guillou; Désiré Tessier; Florence Le Gall; Priscillia Gourvil; Adriana L Dos Santos; Ian Probert; Daniel Vaulot; Colomban de Vargas; Richard Christen
Journal:  Mol Ecol Resour       Date:  2015-04-06       Impact factor: 7.090

4.  Towards Quantitative Microbiome Community Profiling Using Internal Standards.

Authors:  Yajuan Lin; Scott Gifford; Hugh Ducklow; Oscar Schofield; Nicolas Cassar
Journal:  Appl Environ Microbiol       Date:  2019-02-20       Impact factor: 4.792

5.  Rapid and early export of Phaeocystis antarctica blooms in the Ross Sea, Antarctica.

Authors:  G R DiTullio; J M Grebmeier; K R Arrigo; M P Lizotte; D H Robinson; A Leventer; J P Barry; M L VanWoert; R B Dunbar
Journal:  Nature       Date:  2000-04-06       Impact factor: 49.962

6.  DADA2: High-resolution sample inference from Illumina amplicon data.

Authors:  Benjamin J Callahan; Paul J McMurdie; Michael J Rosen; Andrew W Han; Amy Jo A Johnson; Susan P Holmes
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

7.  Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations.

Authors:  Melinda P Simmons; Charles Bachy; Sebastian Sudek; Marijke J van Baren; Lisa Sudek; Manuel Ares; Alexandra Z Worden
Journal:  Mol Biol Evol       Date:  2015-05-20       Impact factor: 16.240

8.  Specific eukaryotic plankton are good predictors of net community production in the Western Antarctic Peninsula.

Authors:  Yajuan Lin; Nicolas Cassar; Adrian Marchetti; Carly Moreno; Hugh Ducklow; Zuchuan Li
Journal:  Sci Rep       Date:  2017-11-01       Impact factor: 4.379

9.  phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data.

Authors:  Paul J McMurdie; Susan Holmes
Journal:  PLoS One       Date:  2013-04-22       Impact factor: 3.240

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  4 in total

1.  Proteorhodopsin Phototrophy in Antarctic Coastal Waters.

Authors:  Jerónimo Cifuentes-Anticevic; María E Alcamán-Arias; Tomás Alarcón-Schumacher; Javier Tamayo-Leiva; Carlos Pedrós-Alió; Laura Farías; Beatriz Díez
Journal:  mSphere       Date:  2021-08-18       Impact factor: 4.389

2.  Diversity of Microbial Eukaryotes Along the West Antarctic Peninsula in Austral Spring.

Authors:  Jean-David Grattepanche; Wade H Jeffrey; Rebecca J Gast; Robert W Sanders
Journal:  Front Microbiol       Date:  2022-05-16       Impact factor: 6.064

Review 3.  Diatoms and Their Microbiomes in Complex and Changing Polar Oceans.

Authors:  Reuben Gilbertson; Emma Langan; Thomas Mock
Journal:  Front Microbiol       Date:  2022-03-25       Impact factor: 5.640

4.  Spatiotemporal Variations in Antarctic Protistan Communities Highlight Phytoplankton Diversity and Seasonal Dominance by a Novel Cryptophyte Lineage.

Authors:  Maria Hamilton; Martina Mascioni; Elisabeth Hehenberger; Charles Bachy; Charmaine Yung; Maria Vernet; Alexandra Z Worden
Journal:  mBio       Date:  2021-12-14       Impact factor: 7.867

  4 in total

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