Literature DB >> 33446491

Reduced RNA turnover as a driver of cellular senescence.

Nowsheen Mullani1,2, Yevheniia Porozhan1, Adèle Mangelinck3, Christophe Rachez1, Mickael Costallat1, Eric Batsché1, Michele Goodhardt4, Giovanni Cenci5,6, Carl Mann3, Christian Muchardt7.   

Abstract

Accumulation of senescent cells is an important contributor to chronic inflammation upon aging. The inflammatory phenotype of senescent cells was previously shown to be driven by cytoplasmic DNA. Here, we propose that cytoplasmic double-stranded RNA has a similar effect. We find that several cell types driven into senescence by different routes share an accumulation of long promoter RNAs and 3' gene extensions rich in retrotransposon sequences. Accordingly, these cells display increased expression of genes involved in response to double stranded RNA of viral origin downstream of the interferon pathway. The RNA accumulation is associated with evidence of reduced RNA turnover, including in some cases, reduced expression of RNA exosome subunits. Reciprocally, depletion of RNA exosome subunit EXOSC3 accelerated expression of multiple senescence markers. A senescence-like RNA accumulation was also observed in cells exposed to oxidative stress, an important trigger of cellular senescence. Altogether, we propose that in a subset of senescent cells, repeat-containing transcripts stabilized by oxidative stress or reduced RNA exosome activity participate in driving and maintaining the permanent inflammatory state characterizing cellular senescence.
© 2021 Mullani et al.

Entities:  

Year:  2021        PMID: 33446491      PMCID: PMC7812316          DOI: 10.26508/lsa.202000809

Source DB:  PubMed          Journal:  Life Sci Alliance        ISSN: 2575-1077


  55 in total

1.  Degradation of Non-coding RNAs Promotes Recycling of Termination Factors at Sites of Transcription.

Authors:  Tommaso Villa; Mara Barucco; Maria-Jose Martin-Niclos; Alain Jacquier; Domenico Libri
Journal:  Cell Rep       Date:  2020-07-21       Impact factor: 9.423

2.  Control of Gene Expression in Senescence through Transcriptional Read-Through of Convergent Protein-Coding Genes.

Authors:  Lisa Muniz; Maharshi Krishna Deb; Marion Aguirrebengoa; Sandra Lazorthes; Didier Trouche; Estelle Nicolas
Journal:  Cell Rep       Date:  2017-11-28       Impact factor: 9.423

Review 3.  Emerging role of NF-κB signaling in the induction of senescence-associated secretory phenotype (SASP).

Authors:  Antero Salminen; Anu Kauppinen; Kai Kaarniranta
Journal:  Cell Signal       Date:  2011-12-11       Impact factor: 4.315

Review 4.  Interferon induction and action.

Authors:  C Colby; M J Morgan
Journal:  Annu Rev Microbiol       Date:  1971       Impact factor: 15.500

5.  MOF Acetyl Transferase Regulates Transcription and Respiration in Mitochondria.

Authors:  Aindrila Chatterjee; Janine Seyfferth; Jacopo Lucci; Ralf Gilsbach; Sebastian Preissl; Lena Böttinger; Christoph U Mårtensson; Amol Panhale; Thomas Stehle; Oliver Kretz; Abdullah H Sahyoun; Sergiy Avilov; Stefan Eimer; Lutz Hein; Nikolaus Pfanner; Thomas Becker; Asifa Akhtar
Journal:  Cell       Date:  2016-10-20       Impact factor: 41.582

6.  Toll-like receptor-3-induced mitochondrial dysfunction in cultured human hepatocytes.

Authors:  Siamak Djafarzadeh; Madhusudanarao Vuda; Jukka Takala; Matthias Ochs; Stephan M Jakob
Journal:  Mitochondrion       Date:  2010-08-04       Impact factor: 4.160

7.  Cytosolic double-stranded RNA activates the NLRP3 inflammasome via MAVS-induced membrane permeabilization and K+ efflux.

Authors:  Luigi Franchi; Tatjana Eigenbrod; Raúl Muñoz-Planillo; Ulas Ozkurede; Yun-Gi Kim; Chakrabarti Arindam; Michael Gale; Robert H Silverman; Marco Colonna; Shizuo Akira; Gabriel Núñez
Journal:  J Immunol       Date:  2014-09-15       Impact factor: 5.422

8.  Comprehensive map of age-associated splicing changes across human tissues and their contributions to age-associated diseases.

Authors:  Kun Wang; Di Wu; Haoyue Zhang; Avinash Das; Mahashweta Basu; Justin Malin; Kan Cao; Sridhar Hannenhalli
Journal:  Sci Rep       Date:  2018-07-19       Impact factor: 4.379

9.  deepTools2: a next generation web server for deep-sequencing data analysis.

Authors:  Fidel Ramírez; Devon P Ryan; Björn Grüning; Vivek Bhardwaj; Fabian Kilpert; Andreas S Richter; Steffen Heyne; Friederike Dündar; Thomas Manke
Journal:  Nucleic Acids Res       Date:  2016-04-13       Impact factor: 16.971

10.  Oxidative stress rapidly stabilizes promoter-proximal paused Pol II across the human genome.

Authors:  Kyle A Nilson; Christine K Lawson; Nicholas J Mullen; Christopher B Ball; Benjamin M Spector; Jeffery L Meier; David H Price
Journal:  Nucleic Acids Res       Date:  2017-11-02       Impact factor: 16.971

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  5 in total

1.  Low expression of EXOSC2 protects against clinical COVID-19 and impedes SARS-CoV-2 replication.

Authors:  Tobias Moll; Valerie Odon; Calum Harvey; Mark O Collins; Andrew Peden; John Franklin; Emily Graves; Jack Ng Marshall; Cleide Dos Santos Souza; Sai Zhang; Lydia Castelli; Guillaume Hautbergue; Mimoun Azzouz; David Gordon; Nevan Krogan; Laura Ferraiuolo; Michael P Snyder; Pamela J Shaw; Jan Rehwinkel; Johnathan Cooper-Knock
Journal:  Life Sci Alliance       Date:  2022-10-14

Review 2.  Nuclear mRNA Export and Aging.

Authors:  Hyun-Sun Park; Jongbok Lee; Hyun-Shik Lee; Seong Hoon Ahn; Hong-Yeoul Ryu
Journal:  Int J Mol Sci       Date:  2022-05-13       Impact factor: 6.208

3.  Sus1 maintains a normal lifespan through regulation of TREX-2 complex-mediated mRNA export.

Authors:  Suji Lim; Yan Liu; Byung-Ho Rhie; Chun Kim; Hong-Yeoul Ryu; Seong Hoon Ahn
Journal:  Aging (Albany NY)       Date:  2022-06-29       Impact factor: 5.955

4.  Low expression of EXOSC2 protects against clinical COVID-19 and impedes SARS-CoV-2 replication.

Authors:  Tobias Moll; Valerie Odon; Calum Harvey; Mark O Collins; Andrew Peden; John Franklin; Emily Graves; Jack N G Marshall; Cleide Dos Santos Souza; Sai Zhang; Mimoun Azzouz; David Gordon; Nevan Krogan; Laura Ferraiuolo; Michael P Snyder; Pamela J Shaw; Jan Rehwinkel; Johnathan Cooper-Knock
Journal:  bioRxiv       Date:  2022-03-07

Review 5.  Nuclear RNA Exosome and Pervasive Transcription: Dual Sculptors of Genome Function.

Authors:  Koichi Ogami; Hiroshi I Suzuki
Journal:  Int J Mol Sci       Date:  2021-12-13       Impact factor: 5.923

  5 in total

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