Literature DB >> 33444739

Targeted mutagenesis in human iPSCs using CRISPR genome-editing tools.

Yicheng Long1, Thomas R Cech2.   

Abstract

Mutagenesis studies have rapidly evolved in the era of CRISPR genome editing. Precise manipulation of genes in human induced pluripotent stem cells (iPSCs) allows biomedical researchers to study the physiological functions of individual genes during development. Furthermore, such genetic manipulation applied to patient-specific iPSCs allows disease modeling, drug screening and development of therapeutics. Although various genome-editing methods have been developed to introduce or remove mutations in human iPSCs, comprehensive strategic designs taking account of the potential side effects of CRISPR editing are needed. Here we present several novel and highly efficient strategies to introduce point mutations, insertions and deletions in human iPSCs, including step-by-step experimental protocols. These approaches involve the application of drug selection for effortless clone screening and the generation of a wild type control strain along with the mutant. We also present several examples of application of these strategies in human iPSCs and show that they are highly efficient and could be applied to other cell types.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR; Genome editing; Mutations; iPSCs

Mesh:

Year:  2021        PMID: 33444739      PMCID: PMC8187269          DOI: 10.1016/j.ymeth.2021.01.002

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   4.647


  63 in total

1.  Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria.

Authors:  Giedrius Gasiunas; Rodolphe Barrangou; Philippe Horvath; Virginijus Siksnys
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-04       Impact factor: 11.205

2.  Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.

Authors:  Kazutoshi Takahashi; Shinya Yamanaka
Journal:  Cell       Date:  2006-08-10       Impact factor: 41.582

3.  Genome engineering with TALENs and ZFNs: repair pathways and donor design.

Authors:  Dana Carroll; Kelly J Beumer
Journal:  Methods       Date:  2014-04-02       Impact factor: 3.608

4.  Optimization of scarless human stem cell genome editing.

Authors:  Luhan Yang; Marc Guell; Susan Byrne; Joyce L Yang; Alejandro De Los Angeles; Prashant Mali; John Aach; Caroline Kim-Kiselak; Adrian W Briggs; Xavier Rios; Po-Yi Huang; George Daley; George Church
Journal:  Nucleic Acids Res       Date:  2013-07-31       Impact factor: 16.971

5.  Transfecting and nucleofecting human induced pluripotent stem cells.

Authors:  Papri Chatterjee; Yuri Cheung; Chee Liew
Journal:  J Vis Exp       Date:  2011-10-05       Impact factor: 1.355

6.  A large-scale analysis of mRNA polyadenylation of human and mouse genes.

Authors:  Bin Tian; Jun Hu; Haibo Zhang; Carol S Lutz
Journal:  Nucleic Acids Res       Date:  2005-01-12       Impact factor: 16.971

7.  Precision genome editing using synthesis-dependent repair of Cas9-induced DNA breaks.

Authors:  Alexandre Paix; Andrew Folkmann; Daniel H Goldman; Heather Kulaga; Michael J Grzelak; Dominique Rasoloson; Supriya Paidemarry; Rachel Green; Randall R Reed; Geraldine Seydoux
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-28       Impact factor: 11.205

8.  CRISPR/Cas9 mediated targeting of multiple genes in Dictyostelium.

Authors:  Ryoya Sekine; Takefumi Kawata; Tetsuya Muramoto
Journal:  Sci Rep       Date:  2018-05-31       Impact factor: 4.379

9.  Highly efficient genome editing via CRISPR-Cas9 in human pluripotent stem cells is achieved by transient BCL-XL overexpression.

Authors:  Xiao-Lan Li; Guo-Hua Li; Juan Fu; Ya-Wen Fu; Lu Zhang; Wanqiu Chen; Cameron Arakaki; Jian-Ping Zhang; Wei Wen; Mei Zhao; Weisheng V Chen; Gary D Botimer; David Baylink; Leslie Aranda; Hannah Choi; Rachel Bechar; Prue Talbot; Chang-Kai Sun; Tao Cheng; Xiao-Bing Zhang
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

10.  CRISPR-Cas9-based mutagenesis frequently provokes on-target mRNA misregulation.

Authors:  Rubina Tuladhar; Yunku Yeu; John Tyler Piazza; Zhen Tan; Jean Rene Clemenceau; Xiaofeng Wu; Quinn Barrett; Jeremiah Herbert; David H Mathews; James Kim; Tae Hyun Hwang; Lawrence Lum
Journal:  Nat Commun       Date:  2019-09-06       Impact factor: 14.919

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  1 in total

1.  Modulating DNA Repair Pathways to Diversify Genomic Alterations in Saccharomyces cerevisiae.

Authors:  Zhen Wang; Yuping Lin; Zongjie Dai; Qinhong Wang
Journal:  Microbiol Spectr       Date:  2022-03-30
  1 in total

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