Literature DB >> 33443141

Genome-wide surveillance of transcription errors in response to genotoxic stress.

C Fritsch1, J-F Gout2,3, S Haroon4, A Towheed5, C Chung6, J LaGosh6, E McGann6, X Zhang7, Y Song8,9, S Simpson10, P S Danthi6, B A Benayoun6, D Wallace9,11, K Thomas10, M Lynch12, M Vermulst13,11.   

Abstract

Mutagenic compounds are a potent source of human disease. By inducing genetic instability, they can accelerate the evolution of human cancers or lead to the development of genetically inherited diseases. Here, we show that in addition to genetic mutations, mutagens are also a powerful source of transcription errors. These errors arise in dividing and nondividing cells alike, affect every class of transcripts inside cells, and, in certain cases, greatly exceed the number of mutations that arise in the genome. In addition, we reveal the kinetics of transcription errors in response to mutagen exposure and find that DNA repair is required to mitigate transcriptional mutagenesis after exposure. Together, these observations have far-reaching consequences for our understanding of mutagenesis in human aging and disease, and suggest that the impact of DNA damage on human physiology has been greatly underestimated.

Entities:  

Keywords:  DNA damage; genotoxic stress; mutagenesis; transcription error

Mesh:

Substances:

Year:  2020        PMID: 33443141      PMCID: PMC7817157          DOI: 10.1073/pnas.2004077118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage.

Authors:  Celine Walmacq; Alan C M Cheung; Maria L Kireeva; Lucyna Lubkowska; Chengcheng Ye; Deanna Gotte; Jeffrey N Strathern; Thomas Carell; Patrick Cramer; Mikhail Kashlev
Journal:  Mol Cell       Date:  2012-03-08       Impact factor: 17.970

Review 2.  Nuclear and mitochondrial DNA repair: similar pathways?

Authors:  Nicolai Balle Larsen; Merete Rasmussen; Lene Juel Rasmussen
Journal:  Mitochondrion       Date:  2005-04       Impact factor: 4.160

3.  Frameshift mutants of beta amyloid precursor protein and ubiquitin-B in Alzheimer's and Down patients.

Authors:  F W van Leeuwen; D P de Kleijn; H H van den Hurk; A Neubauer; M A Sonnemans; J A Sluijs; S Köycü; R D Ramdjielal; A Salehi; G J Martens; F G Grosveld; J Peter; H Burbach; E M Hol
Journal:  Science       Date:  1998-01-09       Impact factor: 47.728

4.  Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae.

Authors:  Gregory I Lang; Andrew W Murray
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

5.  Influence of neighbouring base sequence on N-methyl-N'-nitro-N-nitrosoguanidine mutagenesis in the lacI gene of Escherichia coli.

Authors:  P A Burns; A J Gordon; B W Glickman
Journal:  J Mol Biol       Date:  1987-04-05       Impact factor: 5.469

6.  Transcription errors induce proteotoxic stress and shorten cellular lifespan.

Authors:  Marc Vermulst; Ashley S Denney; Michael J Lang; Chao-Wei Hung; Stephanie Moore; M Arthur Moseley; Arthur M Mosely; J Will Thompson; William J Thompson; Victoria Madden; Jacob Gauer; Katie J Wolfe; Daniel W Summers; Jennifer Schleit; George L Sutphin; Suraiya Haroon; Agnes Holczbauer; Joanne Caine; James Jorgenson; Douglas Cyr; Matt Kaeberlein; Jeffrey N Strathern; Mara C Duncan; Dorothy A Erie
Journal:  Nat Commun       Date:  2015-08-25       Impact factor: 14.919

7.  Multiplexed gene control reveals rapid mRNA turnover.

Authors:  Antoine Baudrimont; Sylvia Voegeli; Eduardo Calero Viloria; Fabian Stritt; Marine Lenon; Takeo Wada; Vincent Jaquet; Attila Becskei
Journal:  Sci Adv       Date:  2017-07-12       Impact factor: 14.136

8.  The landscape of transcription errors in eukaryotic cells.

Authors:  Jean-Francois Gout; Weiyi Li; Clark Fritsch; Annie Li; Suraiya Haroon; Larry Singh; Ding Hua; Hossein Fazelinia; Zach Smith; Steven Seeholzer; Kelley Thomas; Michael Lynch; Marc Vermulst
Journal:  Sci Adv       Date:  2017-10-20       Impact factor: 14.136

9.  Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network.

Authors:  Alasdair J E Gordon; Jennifer A Halliday; Matthew D Blankschien; Philip A Burns; Fumio Yatagai; Christophe Herman
Journal:  PLoS Biol       Date:  2009-02-24       Impact factor: 8.029

10.  Genome-Wide Spectra of Transcription Insertions and Deletions Reveal That Slippage Depends on RNA:DNA Hybrid Complementarity.

Authors:  Charles C Traverse; Howard Ochman
Journal:  mBio       Date:  2017-08-29       Impact factor: 7.867

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  3 in total

1.  Cellular heterogeneity in DNA alkylation repair increases population genetic plasticity.

Authors:  Maxence S Vincent; Stephan Uphoff
Journal:  Nucleic Acids Res       Date:  2021-12-02       Impact factor: 16.971

2.  Rates of mutations and transcript errors in the foodborne pathogen Salmonella enterica subsp. enterica.

Authors:  Jiao Pan; Weiyi Li; Jiahao Ni; Kun Wu; Iain Konigsberg; Caitlyn E Rivera; Clayton Tincher; Colin Gregory; Xia Zhou; Thomas G Doak; Heewook Lee; Yan Wang; Xiang Gao; Michael Lynch; Hongan Long
Journal:  Mol Biol Evol       Date:  2022-04-21       Impact factor: 8.800

Review 3.  RNA polymerase pausing, stalling and bypass during transcription of damaged DNA: from molecular basis to functional consequences.

Authors:  Aleksei Agapov; Anna Olina; Andrey Kulbachinskiy
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

  3 in total

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