Literature DB >> 33441924

TIM29 is required for enhanced stem cell activity during regeneration in the flatworm Macrostomum lignano.

Stijn Mouton1, Kirill Ustyantsev2, Frank Beltman3,4, Lisa Glazenburg3, Eugene Berezikov5,6.   

Abstract

TIM29 is a mitochondrial inner membrane protein that interacts with the protein import complex TIM22. TIM29 was shown to stabilize the TIM22 complex but its biological function remains largely unknown. Until recently, it was classified as one of the Domain of Unknown Function (DUF) genes, with a conserved protein domain DUF2366 of unclear function. Since characterizing DUF genes can provide novel biological insight, we used previously established transcriptional profiles of the germline and stem cells of the flatworm Macrostomum lignano to probe conserved DUFs for their potential role in germline biology, stem cell function, regeneration, and development. Here, we demonstrate that DUF2366/TIM29 knockdown in M. lignano has very limited effect during the normal homeostatic condition but prevents worms from adapting to a highly proliferative state required for regeneration.

Entities:  

Year:  2021        PMID: 33441924      PMCID: PMC7806878          DOI: 10.1038/s41598-020-80682-7

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  38 in total

Review 1.  Fundamentals of planarian regeneration.

Authors:  Peter W Reddien; Alejandro Sánchez Alvarado
Journal:  Annu Rev Cell Dev Biol       Date:  2004       Impact factor: 13.827

2.  Why translation counts for mitochondria - retrograde signalling links mitochondrial protein synthesis to mitochondrial biogenesis and cell proliferation.

Authors:  Brendan J Battersby; Uwe Richter
Journal:  J Cell Sci       Date:  2013-09-06       Impact factor: 5.285

3.  Corset: enabling differential gene expression analysis for de novo assembled transcriptomes.

Authors:  Nadia M Davidson; Alicia Oshlack
Journal:  Genome Biol       Date:  2014-07-26       Impact factor: 13.583

4.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

5.  DUFs: families in search of function.

Authors:  Alex Bateman; Penny Coggill; Robert D Finn
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-05

6.  Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.

Authors:  Davis J McCarthy; Yunshun Chen; Gordon K Smyth
Journal:  Nucleic Acids Res       Date:  2012-01-28       Impact factor: 16.971

7.  Tim29 is a novel subunit of the human TIM22 translocase and is involved in complex assembly and stability.

Authors:  Yilin Kang; Michael James Baker; Michael Liem; Jade Louber; Matthew McKenzie; Ishara Atukorala; Ching-Seng Ang; Shivakumar Keerthikumar; Suresh Mathivanan; Diana Stojanovski
Journal:  Elife       Date:  2016-08-24       Impact factor: 8.140

8.  Chromosome Evolution in the Free-Living Flatworms: First Evidence of Intrachromosomal Rearrangements in Karyotype Evolution of Macrostomum lignano (Platyhelminthes, Macrostomida).

Authors:  Kira S Zadesenets; Nikita I Ershov; Eugene Berezikov; Nikolay B Rubtsov
Journal:  Genes (Basel)       Date:  2017-10-30       Impact factor: 4.096

9.  A novel flatworm-specific gene implicated in reproduction in Macrostomum lignano.

Authors:  Magda Grudniewska; Stijn Mouton; Margriet Grelling; Anouk H G Wolters; Jeroen Kuipers; Ben N G Giepmans; Eugene Berezikov
Journal:  Sci Rep       Date:  2018-02-16       Impact factor: 4.379

Review 10.  The free-living flatworm Macrostomum lignano.

Authors:  Jakub Wudarski; Bernhard Egger; Steven A Ramm; Lukas Schärer; Peter Ladurner; Kira S Zadesenets; Nikolay B Rubtsov; Stijn Mouton; Eugene Berezikov
Journal:  Evodevo       Date:  2020-03-02       Impact factor: 2.250

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  1 in total

1.  A pan-metazoan concept for adult stem cells: the wobbling Penrose landscape.

Authors:  Baruch Rinkevich; Loriano Ballarin; Pedro Martinez; Ildiko Somorjai; Oshrat Ben-Hamo; Ilya Borisenko; Eugene Berezikov; Alexander Ereskovsky; Eve Gazave; Denis Khnykin; Lucia Manni; Olga Petukhova; Amalia Rosner; Eric Röttinger; Antonietta Spagnuolo; Michela Sugni; Stefano Tiozzo; Bert Hobmayer
Journal:  Biol Rev Camb Philos Soc       Date:  2021-10-06
  1 in total

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